Changes between Version 5 and Version 6 of XTandemSearchEngineInterface


Ignore:
Timestamp:
Sep 19, 2008, 8:28:25 AM (13 years ago)
Author:
olle
Comment:

Wiki page update to refer to the new menu system. Also added note of filename of uploaded GPM result files under Traceability.

Legend:

Unmodified
Added
Removed
Modified
  • XTandemSearchEngineInterface

    v5 v6  
    4040=== Creating/Editing an X!Tandem Parameter Set ===
    4141
    42  1. In the left side menu, click "`X!Tandem parameter sets`".
     42 1. Select `View -> XTandem`.
    4343 1. Click on "`New X!Tandem Parameter Set`".
    4444 1. Enter name and description, then click "`Save`" to copy the default X!Tandem parameter set, or click on "`Select File to copy X!Tandem Parameters from`".
     
    4949
    5050 1. Select the Project to use.
    51  1. Under `Files`, select the input spectrum files by clicking their check boxes.
     51 1. Select `<Active Project> -> Files`, then select the input spectrum files by clicking their check boxes.
    5252 1. Click on "`Extensions`", then select "`Use spectrum file(s) for X!Tandem search`".
    5353 1. Select an X!Tandem parameter set by clicking its check box.
     
    7272 1. An X!Tandem search job has references in its status field to the X!Tandem parameter set and X!Tandem result file (optionally the latter is replaced by an error message if the search could not be performed).
    7373 1. An uploaded X!Tandem result file has references in its description field to the X!Tandem parameter set and spectrum file used. Its file type is set to "`Tandem result`".
     74 1. For easier identification of an uploaded GPM result file, the filename of the original result file is prefixed with the base name of the spectrum file (filename without file extension) plus an underscore character '`_`', and file extension ".xml" is exchanged for ".xt.xml".
    7475
    7576== Background Information ==