Package | Description |
---|---|
org.proteios.core |
This package contains the core business logic of Proteios 2.
|
org.proteios.core.data |
This package contains pure data-holder classes which are mapped
to the database using Hibernate.
|
Modifier and Type | Class and Description |
---|---|
class |
OwnedItem<D extends OwnedData>
|
Modifier and Type | Class and Description |
---|---|
class |
AcquisitionData
This represents an acquisition.
|
class |
AnnotatedData
This class extends the
CommonData class and implements the
AnnotatableData interface. |
class |
AnnotationTypeData
This class holds information about an annotation type.
|
class |
BioMaterialData
This class is the root class for biomaterials.
|
class |
BioSourceData
This represents a biosoruce which is the starting point of
all biomaterials.
|
class |
ClientData
This class holds information about a client.
|
class |
CommonData
This is a convenience class that extends the
SharedData class
and implements the NameableData and RemovableData
interfaces. |
class |
DataProcessingStepData
This represents a data processing step of
a peak list set.
|
class |
DigestParameterData
This represents a digestion parameter.
|
class |
DirectoryData
This class holds information about directories.
|
class |
ExtractData
This represents an extract.
|
class |
FileData
This class holds information about a file.
|
class |
GelElectrophoresisData
This represents a gel object which is generated by a separation event.
|
class |
HardwareConfigurationData
This represents a hardwareconfiguration which is a
starting point of an instrumentconfiguration.
|
class |
HardwareData
This class holds information about a Hardware.
|
class |
InputSpectraData
This represents a file with spectra or peaklists used for a spectrum search.
|
class |
InstrumentConfigurationData
This class is the root class for instrumentconfigurations.
|
class |
IPGData
This represents an IPG (Immobilized pH Gradient) which is a starting point of
a separationmethod.
|
class |
JobData
This class holds information about a job.
|
class |
LabelData
This represents a labeling compund use to label extracts.
|
class |
LabeledExtractData
This represents a labeled extract.
|
class |
LiquidChromatographyData
This represents Liquid Chromatography, which is a separation event
without a separation method.
|
class |
MascotParameterSetStorageData
This represents the top element of a protein identification search.
|
class |
MeasuredAreaData
This represents a measured area.
|
class |
MeasuredBioMaterialData
This class is the root class for measured biomaterials, ie biomaterials for
where the quantity is tracked.
|
class |
ModificationData
This class is the root class for modifications.
|
class |
ObservedModificationData
This represents a ObservedModification of a Modification
|
class |
OMSSAParameterSetStorageData
This represents the top element of a protein identification search.
|
class |
PeakListData
This represents a peaklist which is a starting point of a peak.
|
class |
PeakListSetData
This represents a peaklistset which is a starting point of a peaklist.
|
class |
PeptideData
This represents a peptide
|
class |
PluginConfigurationData
This data class is used to configure a plugin.
|
class |
PluginDefinitionData
This class represent an installed plugin.
|
class |
PolyPeptideData
This class is the root class for biomaterials.
|
class |
ProjectData
This class holds information about a project.
|
class |
ProteinData
This represents a Protein (ParentMolecule for of a PolyPeptide
|
class |
ProtocolData |
class |
SampleData
This represents a sample.
|
class |
SearchDatabaseData
This class hold information about a database used for a SpectrumSearch.
|
class |
SearchModificationData
This represents a SearchModification of a Modification
|
class |
SearchResultData
This class represents a search result.
|
class |
SeparationMethodData
This class is the root class for separation methods.
|
class |
SharedData
This class extends the
OwnedData class and implements the
ShareableData interface. |
class |
SoftwareConfigurationData
This represents a softwareconfiguration which is a
starting point of an instrumentconfiguration.
|
class |
SoftwareData
This class holds information about a software.
|
class |
SpectrumSearchData
This represents the top element of a protein identification search.
|
class |
XTandemParameterSetStorageData
This represents the top element of a protein identification search.
|