org.proteios.core.data

Class SearchModificationData

java.lang.Object

org.proteios.core.data.BasicData

org.proteios.core.data.OwnedData

org.proteios.core.data.SharedData

org.proteios.core.data.CommonData

org.proteios.core.data.ModificationData

org.proteios.core.data.SearchModificationData

All Implemented Interfaces:

IdentifiableData, NameableData, OwnableData, RemovableData, ShareableData

public class SearchModificationData
extends ModificationData

This represents a SearchModification of a Modification

Version:

2.0

Author:

Fredrik

See Also:

SearchModification

Hibernate: subclass

discriminator-value="2"

Field Summary

Fields

Modifier and Type	Field and Description
static int	MAX_AASPECIFICITY_LENGTH

Fields inherited from class org.proteios.core.data.ModificationData

averageDeltaMass, averageMass, MAX_CVID_LENGTH, MAX_DIFF_FORMULA_LENGTH, monoisotopicDeltaMass, monoisotopicMass

Fields inherited from interface org.proteios.core.data.NameableData

MAX_DESCRIPTION_LENGTH, MAX_NAME_LENGTH

Constructor Summary

Constructors

Constructor and Description
SearchModificationData()

Method Summary

Methods

Modifier and Type	Method and Description
String	getAminoAcidSpecificity()
SpectrumSearchData	getSpectrumSearch() Get the SpectrumSearchData this SearchDatabase is created from.
int	getTerminalSpecificity()
boolean	isFixed()
void	setAminoAcidSpecificity(String aminoAcidSpecificity)
void	setFixed(boolean fixed)
void	setSpectrumSearch(SpectrumSearchData spectrumSearch) Set the SpectrumSearchData this peakList is created from.
void	setTerminalSpecificity(int terminalSpecificity)

Methods inherited from class org.proteios.core.data.ModificationData

getAverageDeltaMass, getAverageMass, getCvId, getDiffFormula, getMonoisotopicDeltaMass, getMonoisotopicMass, getPosition, isSubstitutionModification, setAverageDeltaMass, setAverageMass, setCvId, setDiffFormula, setMonoisotopicDeltaMass, setMonoisotopicMass, setPosition, setSubstitutionModification

Methods inherited from class org.proteios.core.data.CommonData

getDescription, getName, isRemoved, setDescription, setName, setRemoved

Methods inherited from class org.proteios.core.data.SharedData

getItemKey, getProjectKey, setItemKey, setProjectKey

Methods inherited from class org.proteios.core.data.OwnedData

getOwner, setOwner

Methods inherited from class org.proteios.core.data.BasicData

equals, getId, getVersion, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.proteios.core.data.IdentifiableData

getId, getVersion

Methods inherited from interface org.proteios.core.data.OwnableData

getOwner, setOwner

Field Detail

MAX_AASPECIFICITY_LENGTH

public static final int MAX_AASPECIFICITY_LENGTH

See Also:

Constant Field Values

Constructor Detail

SearchModificationData

public SearchModificationData()

Method Detail

getSpectrumSearch

public SpectrumSearchData getSpectrumSearch()

Get the SpectrumSearchData this SearchDatabase is created from.

Returns:

The SpectrumSearchData item or null if not known

Hibernate: many-to-one

column="`spectrumSearchId`"

setSpectrumSearch

public void setSpectrumSearch(SpectrumSearchData spectrumSearch)

Set the SpectrumSearchData this peakList is created from.

Parameters:

spectrumSearch - The creator spectrumSearch

getAminoAcidSpecificity

public String getAminoAcidSpecificity()

Returns:

Returns the aminoAcidSpecificity.

Hibernate: property

column="`aaSpecificity`" type="string" length="255" not-null="false"

setAminoAcidSpecificity

public void setAminoAcidSpecificity(String aminoAcidSpecificity)

Parameters:

aminoAcidSpecificity - The aminoAcidSpecificity to set.

getTerminalSpecificity

public int getTerminalSpecificity()

Returns:

Returns the terminalSpecificity.

Hibernate: property

column="`terminalSpecificity`"

setTerminalSpecificity

public void setTerminalSpecificity(int terminalSpecificity)

Parameters:

terminalSpecificity - The terminalSpecificity to set.

isFixed

public boolean isFixed()

Returns:

Returns the fixed modification flag

Hibernate: property

column="`fixed`"

setFixed

public void setFixed(boolean fixed)