org.proteios.core.data

Class PeptideData

java.lang.Object

org.proteios.core.data.BasicData

org.proteios.core.data.OwnedData

org.proteios.core.data.SharedData

org.proteios.core.data.CommonData

org.proteios.core.data.AnnotatedData

org.proteios.core.data.PolyPeptideData

org.proteios.core.data.PeptideData

All Implemented Interfaces:

AnnotatableData, IdentifiableData, NameableData, OwnableData, RemovableData, ShareableData

public class PeptideData
extends PolyPeptideData

This represents a peptide

Version:

2.0

Author:

Fredrik

See Also:

Peptide

Hibernate: subclass

discriminator-value="2"

Field Summary

Fields

Modifier and Type	Field and Description
int	endPosition
static int	MAX_POSTSEQUENCE_LENGTH
static int	MAX_PRESEQUENCE_LENGTH
int	startPosition

Fields inherited from class org.proteios.core.data.PolyPeptideData

MAX_ACCESSION_NUMBER_LENGTH, MAX_LSID_LENGTH, MAX_SEQUENCE_LENGTH

Fields inherited from interface org.proteios.core.data.NameableData

MAX_DESCRIPTION_LENGTH, MAX_NAME_LENGTH

Constructor Summary

Constructors

Constructor and Description
PeptideData()

Method Summary

Methods

Modifier and Type	Method and Description
int	getEndPosition()
String	getPostSequence()
String	getPreSequence()
int	getStartPosition()
void	setEndPosition(int endPosition)
void	setPostSequence(String postSequence)
void	setPreSequence(String preSequence)
void	setStartPosition(int startPosition)

Methods inherited from class org.proteios.core.data.PolyPeptideData

getAccessionNumber, getLsid, getObservedModifications, getSearchResult, getSequence, setAccessionNumber, setLsid, setObservedModifications, setSearchResult, setSequence

Methods inherited from class org.proteios.core.data.AnnotatedData

getAnnotationSet, setAnnotationSet

Methods inherited from class org.proteios.core.data.CommonData

getDescription, getName, isRemoved, setDescription, setName, setRemoved

Methods inherited from class org.proteios.core.data.SharedData

getItemKey, getProjectKey, setItemKey, setProjectKey

Methods inherited from class org.proteios.core.data.OwnedData

getOwner, setOwner

Methods inherited from class org.proteios.core.data.BasicData

equals, getId, getVersion, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.proteios.core.data.IdentifiableData

getId, getVersion

Methods inherited from interface org.proteios.core.data.OwnableData

getOwner, setOwner

Field Detail

startPosition

public int startPosition

endPosition

public int endPosition

MAX_PRESEQUENCE_LENGTH

public static final int MAX_PRESEQUENCE_LENGTH

See Also:

Constant Field Values

MAX_POSTSEQUENCE_LENGTH

public static final int MAX_POSTSEQUENCE_LENGTH

See Also:

Constant Field Values

Constructor Detail

PeptideData

public PeptideData()

Method Detail

getStartPosition

public int getStartPosition()

Returns:

Returns the startPosition.

Hibernate: property

column="`start_position`"

setStartPosition

public void setStartPosition(int startPosition)

Parameters:

startPosition - The startPosition to set.

getEndPosition

public int getEndPosition()

Returns:

Returns the endPosition.

Hibernate: property

column="`end_position`"

setEndPosition

public void setEndPosition(int endPosition)

Parameters:

endPosition - The endPosition to set.

getPreSequence

public String getPreSequence()

Returns:

Returns the preSequence.

Hibernate: property

column="`presequence`" type="string" length="255" not-null="false"

setPreSequence

public void setPreSequence(String preSequence)

Parameters:

preSequence - The preSequence to set.

getPostSequence

public String getPostSequence()

Returns:

Returns the postSequence.

Hibernate: property

column="`postsequence`" type="string" length="255" not-null="false"

setPostSequence

public void setPostSequence(String postSequence)

Parameters:

postSequence - The postSequence to set.