org.proteios.core.data

Class MeasuredBioMaterialData

java.lang.Object

org.proteios.core.data.BasicData

org.proteios.core.data.OwnedData

org.proteios.core.data.SharedData

org.proteios.core.data.CommonData

org.proteios.core.data.AnnotatedData

org.proteios.core.data.BioMaterialData

org.proteios.core.data.MeasuredBioMaterialData

All Implemented Interfaces:

AnnotatableData, IdentifiableData, NameableData, OwnableData, RemovableData, ShareableData

Direct Known Subclasses:

ExtractData, LabeledExtractData, MeasuredAreaData, SampleData

public abstract class MeasuredBioMaterialData
extends BioMaterialData

This class is the root class for measured biomaterials, ie biomaterials for where the quantity is tracked.

Version:

2.0

Author:

Nicklas

See Also:

MeasuredBioMaterial, Biomaterials overview

Last modified

$Date: 2009-04-09 08:48:11 +0200 (Thu, 09 Apr 2009) $

Hibernate: subclass

discriminator-value="-1" lazy="false"

Field Summary

Fields inherited from class org.proteios.core.data.BioMaterialData

MAX_EXTERNAL_ID_LENGTH, MAX_STORAGE_LOCATION_LENGTH

Fields inherited from interface org.proteios.core.data.NameableData

MAX_DESCRIPTION_LENGTH, MAX_NAME_LENGTH

Constructor Summary

Constructors

Constructor and Description
MeasuredBioMaterialData()

Method Summary

Methods

Modifier and Type	Method and Description
Float	getConcentrationInGramsPerLiter() Get the concentration of the biomaterial.
CreationEventData	getCreationEvent()
Set<BioMaterialEventData>	getEvents() These are the events that have used this biomaterial.
Float	getOriginalQuantityInMicroLiters() Get the original quantity of the biomaterial measured in microliters.
BioMaterialData	getParent() Get the parent biomaterial.
Float	getRemainingQuantityInMicroLiters() Get the remaining quantity of the biomaterial measured in microliters.
boolean	isPooled() If the biomaterial was created by pooling other biomaterials of the same type or not.
void	setConcentrationInGramsPerLiter(Float concentration)
void	setCreationEvent(CreationEventData creationEvent)
void	setEvents(Set<BioMaterialEventData> events)
void	setOriginalQuantityInMicroLiters(Float originalQuantity)
void	setParent(BioMaterialData parent)
void	setPooled(boolean pooled)
void	setRemainingQuantityInMicroLiters(Float remainingQuantity)

Methods inherited from class org.proteios.core.data.BioMaterialData

getExternalId, getFiles, getStorageLocation, setExternalId, setFiles, setStorageLocation

Methods inherited from class org.proteios.core.data.AnnotatedData

getAnnotationSet, setAnnotationSet

Methods inherited from class org.proteios.core.data.CommonData

getDescription, getName, isRemoved, setDescription, setName, setRemoved

Methods inherited from class org.proteios.core.data.SharedData

getItemKey, getProjectKey, setItemKey, setProjectKey

Methods inherited from class org.proteios.core.data.OwnedData

getOwner, setOwner

Methods inherited from class org.proteios.core.data.BasicData

equals, getId, getVersion, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.proteios.core.data.IdentifiableData

getId, getVersion

Methods inherited from interface org.proteios.core.data.OwnableData

getOwner, setOwner

Constructor Detail

MeasuredBioMaterialData

public MeasuredBioMaterialData()

Method Detail

getParent

public BioMaterialData getParent()

Get the parent biomaterial. Used for non-pooled biomaterials. The core must add logic to check that only a biomaterial of the parent type is linked.

Hibernate: many-to-one

column="`parent_id`" not-null="false" outer-join="false"

setParent

public void setParent(BioMaterialData parent)

getConcentrationInGramsPerLiter

public Float getConcentrationInGramsPerLiter()

Get the concentration of the biomaterial. Normally this is the protein concentration in g/l

Hibernate: property

column="`concentration`" type="float" not-null="false"

setConcentrationInGramsPerLiter

public void setConcentrationInGramsPerLiter(Float concentration)

getOriginalQuantityInMicroLiters

public Float getOriginalQuantityInMicroLiters()

Get the original quantity of the biomaterial measured in microliters.

Hibernate: property

column="`original_quantity`" type="float" not-null="false"

setOriginalQuantityInMicroLiters

public void setOriginalQuantityInMicroLiters(Float originalQuantity)

getRemainingQuantityInMicroLiters

public Float getRemainingQuantityInMicroLiters()

Get the remaining quantity of the biomaterial measured in microliters.

Hibernate: property

column="`remaining_quantity`" type="float" not-null="false"

setRemainingQuantityInMicroLiters

public void setRemainingQuantityInMicroLiters(Float remainingQuantity)

isPooled

public boolean isPooled()

If the biomaterial was created by pooling other biomaterials of the same type or not.

Hibernate: property

column="`pooled`" type="boolean" not-null="false"

setPooled

public void setPooled(boolean pooled)

getCreationEvent

public CreationEventData getCreationEvent()

Returns:

Returns the creationEvent.

Hibernate: many-to-one

class="org.proteios.core.data.CreationEventData" column="`creationEventId`"

setCreationEvent

public void setCreationEvent(CreationEventData creationEvent)

Parameters:

creationEvent - The creationEvent to set.

getEvents

public Set<BioMaterialEventData> getEvents()

These are the events that have used this biomaterial. This is the inverse end.

Hibernate: set

table="`BioMaterialEventSources`" lazy="true" inverse="true"

Hibernate: collection-key

column="`biomaterial_id`"

Hibernate: collection-many-to-many

column="`event_id`" class="org.proteios.core.data.BioMaterialEventData"

setEvents

public void setEvents(Set<BioMaterialEventData> events)