Specification

What should Proteios accomplish?

1. Proteios should solve the complex task of managing large amount of data from proteomics experiments
2. Proteios is also aimed at being an extensible analysis platform.

To accomplish (i) Proteios should provide services like

1. User management
2. Role based permissions
3. Data sharing
4. Uploading a set of files
5. Data import of different formats, e.g. mzData, PKL
6. Data searching/filtering
7. Sample management
8. Project management
9. Report generation
10. Data annotation
11. Notification management

Use Cases

These use cases describe in part the workflow of Swegene proteomics facility and their feature requests in Proteios.

1. 2D Gel-based proteomics workflow
2. Quantitative LC-MS proteomics workflow
3. Different mass spectrometry modes to handle
4. Dep of Biochemistrys broad view of aim with Proteios
5. Dep of Biochemistry 2D-Gel-based workflow
6. Use case example

Diagrams

1. Mass spectrometry part of database

• GeneralActivity