Changes between Version 37 and Version 38 of Specification

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Timestamp:
03/26/10 10:06:18 (5 months ago)
Author:
gregory
Comment:

Removing links to dead documents, See #666

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  • Specification

    v37 v38  
    1 [[PageOutline]] 
    2  
    31= Specification = 
    4  
    5 {{{ 
    6 #!html 
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    8 }}} 
    9 {{{ 
    10 #!html 
    11 <div style="margin-left: -1em;font-size: 1.2em; font-weight: bold"> 
    12 }}} 
    13 Recent Changes 
    14 {{{ 
    15 #!html  
    16 </div> 
    17 }}} 
    18 [[RecentChanges( ,5)]] 
    19 {{{ 
    20 #!html  
    21 </div> 
    22 }}} 
    23  
    24  
    25  
    26 == What should Proteios accomplish? == 
    272 
    283 i.  Proteios should solve the complex task of managing large amount of data from proteomics experiments 
    294 ii. Proteios is also aimed at being an extensible analysis platform. 
    30  
    31 == To accomplish (i) Proteios should provide services like == 
    32  
    33  1. [wiki:ServiceUserAdministration User management] 
    34  1. [wiki:ServiceRolePermissions Role based permissions] 
    35  1. [wiki:ServiceDataSharing Data sharing] 
    36  1. [wiki:ServiceFileUpload Uploading a set of files] 
    37  1. [wiki:ServiceDataImport Data import of different formats, e.g. mzData, PKL] 
    38  1. [wiki:ServiceSearchAndFilter Data searching/filtering] 
    39  1. [wiki:ServiceSampleManagement Sample management] 
    40  1. [wiki:ServiceProjectManagement Project management] 
    41  1. [wiki:ServiceReportGeneration Report generation] 
    42  1. [wiki:ServiceDataAnnotation Data annotation] 
    43  1. [wiki:ServiceNotificationManagement Notification management] 
    44  
    45 == Use Cases == 
    46  
    47 These use cases describe in part the workflow of Swegene proteomics facility and their feature requests in Proteios.  
    48  
    49  1. [wiki:UseCase2DGelBased 2D Gel-based proteomics workflow] 
    50  1. [wiki:UseCaseQuantitativeLCMS Quantitative LC-MS proteomics workflow]  
    51  1. [wiki:UseCaseMSTypes Different mass spectrometry modes to handle] 
    52  1. [wiki:UseCaseBiochemistryBroad Dep of Biochemistrys broad view of aim with Proteios] 
    53  1. [wiki:UseCaseBiochemistry2DgelBased Dep of Biochemistry 2D-Gel-based workflow] 
    54  1. [wiki:UseCaseExample Use case example] 
    55  
    56 == Diagrams == 
    57  
    58  1. [wiki:DatabaseModelMS Mass spectrometry part of database] 
    59  
    60  * GeneralActivity