Opened 7 years ago

Closed 7 years ago

#802 closed (fixed)

Hits import for replicates

Reported by: Fredrik Levander Owned by: olle
Milestone: Proteios SE 2.19.0 Keywords:
Cc:

Description

It should be possible to parse replicate IDs from file names as it is currently for fraction IDs, when importing using the non-gel hits report. Currently relicate ID is only set if there is an annotation for the file. Replicate annotation at the file level is still preferable, but if it is absent parsing from file name should be possible. Refs #772.

Change History (6)

comment:1 Changed 7 years ago by olle

Status: newassigned

Ticket accepted.

comment:2 Changed 7 years ago by olle

Traceability note:

  • Technical replicates were introduced in Ticket #772 (Replicate distinction), where non-gel hits import was updated to support import of a replicate ID in the hits table from annotation "replicate" for the mass spectrum file.
  • Input of fraction ID from either file annotations or by parsing file names in non-gel hits import were introduced in Ticket #740 (Files for hits import registration from biomaterial annotations), change set [4126].
Last edited 7 years ago by olle (previous) (diff)

comment:3 Changed 7 years ago by olle

Design description:

Design of input methods for replicate ID will be based on that for fraction ID, with the following simplifications:

  • The replicate ID input method menu should only have two items: "Annotation" and "File name".
  • Input method "Annotation" should be default.

The same default regexp pattern should be used for replicate ID, as for fraction ID, ".+\_(.+)\..+".

comment:4 Changed 7 years ago by olle

(In [4460]) Refs #802. Refs #772. Class/file core/Hit.java in api/core/ updated by exchanging name of static int constant MAX_RELICATE_ID_LENGTH for MAX_REPLICATE_ID_LENGTH.

comment:5 Changed 7 years ago by olle

(In [4461]) Refs #802. Non-gel hits import updated to support replicate ID input from parsing filename of mass spectrum file. The design is based on that for fraction ID input, but with fewer alternatives.

comment:6 Changed 7 years ago by olle

Resolution: fixed
Status: assignedclosed

Ticket closed as the requested functionality has been added.

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