Opened 14 years ago

Closed 14 years ago

Last modified 13 years ago

#123 closed (fixed)

Implement search results part of database

Reported by: Fredrik Levander Owned by: Fredrik Levander
Milestone: Alpha 2 Keywords:
Cc:

Description

The database structure that will enable import of search results has to be implemented It should be compatible with analysisXML.

Change History (23)

comment:1 Changed 14 years ago by Fredrik Levander

(In [1076]) Refs #82. Refs #123. Added SpectrumSearch? (to replace mzAnalysis). Containment not yet final.

comment:2 Changed 14 years ago by Fredrik Levander

(In [1077]) Refs #82. Refs #123. Now using Software class for search engines

comment:3 Changed 14 years ago by Fredrik Levander

(In [1079]) Refs #123. Some new dataclasses for the SpectrumSearch? part of the database. PeakListSetData? updated to contain direct association with SpectrumSearch?. PolyPeptide? and Modification not yet implemented.

comment:4 Changed 14 years ago by Fredrik Levander

(In [1080]) Refs #123. Test class for SpectrumSearch?. Checks sorting of SearchResult? and some associations

comment:5 Changed 14 years ago by Fredrik Levander

(In [1081]) Refs #123. Added core classes for most of the new data classes. inputSpectra still TODO.

comment:6 Changed 14 years ago by Fredrik Levander

(In [1082]) Refs #123. Tests for some of the new functions in SpectrumSearch?.

comment:7 Changed 14 years ago by Fredrik Levander

(In [1092]) Refs #123. PolyPeptide? added to database model

comment:8 Changed 14 years ago by Fredrik Levander

(In [1095]) Refs #123. Further changes for search results

comment:9 Changed 14 years ago by Fredrik Levander

(In [1412]) Refs #123. Refs#129. Addition of SearchDatabase? to SpectrumSearch? fixed. More database info set at PIUMS Matcher import.

comment:10 Changed 14 years ago by Fredrik Levander

(In [1413]) Refs #123, Refs#129. Added function to add DigestParameter? to SpectrumSearch? and added to PIUMS Matcher importer

comment:11 Changed 14 years ago by Fredrik Levander

(In [1417]) Refs #123. Changed to HashSet? instead of TreeSet? for classes that have no comparable().

comment:12 Changed 14 years ago by Fredrik Levander

(In [1419]) Refs#123. Test classes updated to use HashSet? where applicable

comment:13 Changed 14 years ago by Fredrik Levander

(In [1420]) Refs #82. Refs#123. Updated database diagram to Search Results part of database.

comment:14 Changed 14 years ago by Fredrik Levander

Status: newassigned

comment:15 Changed 14 years ago by Fredrik Levander

(In [1424]) Refs #123. Added modifications.

comment:16 Changed 14 years ago by Fredrik Levander

(In [1428]) Refs #123. Refs #82. Updated Magic Draw UML model to reflect current spectrumSearches model

comment:17 Changed 14 years ago by Fredrik Levander

(In [1429]) Refs #123. Adjusted test class

comment:18 Changed 14 years ago by Fredrik Levander

Resolution: fixed
Status: assignedclosed

(In [1430]) Fixes #123. Changed database column name in digestParameterData. A database reinstallation could be needed. Adjusted the use and added documentation to the terminalSpecificity in SearchModification?.

comment:19 Changed 14 years ago by Fredrik Levander

(In [1493]) Refs #123. Added permissions for searchModification and observedModification

comment:20 Changed 13 years ago by Fredrik Levander

(In [1937]) Refs #123. Added one-to-many links for DigestParameter?, Search Modification and SearchDatabase? to SpectrumSearch?. This is needed for efficient ItemQuerys?. Does not seem to affect the database.

comment:21 Changed 13 years ago by Fredrik Levander

(In [1964]) Refs #123. Changed types in item class to Float from float to reflect data layer. Refs #167. Updated search results view.

comment:22 Changed 13 years ago by Fredrik Levander

(In [2030]) Refs #123. Corrected generation of bidirectional links which resulted in no table generation.

comment:23 Changed 13 years ago by Fredrik Levander

(In [2270]) Refs #123. Corrected some associations that didn't work both ways

Note: See TracTickets for help on using tickets.