Hierarchy For All Packages

Package Hierarchies:

org.proteios, org.proteios.core, org.proteios.core.authentication, org.proteios.core.data, org.proteios.core.data.keyring, org.proteios.core.plugin, org.proteios.core.query, org.proteios.install, org.proteios.io, org.proteios.io.mzdata, org.proteios.method, org.proteios.method.write, org.proteios.props, org.proteios.util, org.proteios.util.jep

Class Hierarchy

• java.lang.Object
  • org.proteios.core.plugin.AboutImpl (implements org.proteios.core.plugin.About)
  • org.proteios.core.AbstractBatcher (implements org.proteios.core.Batcher)
    • org.proteios.core.BasicBatcher<D> (implements org.proteios.core.AccessControlled)
      • org.proteios.core.PeakBatcher
      • org.proteios.core.PeakListBatcher
  • org.proteios.core.plugin.AbstractPlugin (implements org.proteios.core.plugin.Plugin)
  • org.proteios.props.AbstractReader<VALUE_TEMPLATE,OBJECT_TEMPLATE> (implements org.proteios.props.AttributeReader<VALUETEMPLATE,OBJECT_TEMPLATE>)
    • org.proteios.props.AnnotationTypeNameReader
    • org.proteios.props.AnnotationValueReader
    • org.proteios.props.DateReader
    • org.proteios.props.EntryDateReader
    • org.proteios.props.EnumReader
    • org.proteios.props.EventCommentReader
    • org.proteios.props.EventTypeReader
    • org.proteios.props.ExternalIdReader
    • org.proteios.props.FileTypeNameReader
    • org.proteios.props.IdentificationResultFileNameReader (implements org.proteios.props.AttributeReader<VALUETEMPLATE,OBJECT_TEMPLATE>)
    • org.proteios.props.IdReader
    • org.proteios.props.LabelNameReader
    • org.proteios.props.MascotParameterFileNameReader (implements org.proteios.props.AttributeReader<VALUETEMPLATE,OBJECT_TEMPLATE>)
    • org.proteios.props.MascotParameterFileSearchTypeReader (implements org.proteios.props.AttributeReader<VALUETEMPLATE,OBJECT_TEMPLATE>)
    • org.proteios.props.NameReader
    • org.proteios.props.OMSSAParameterFileNameReader (implements org.proteios.props.AttributeReader<VALUETEMPLATE,OBJECT_TEMPLATE>)
    • org.proteios.props.OriginalQuantityReader
    • org.proteios.props.PeakListFileNameReader (implements org.proteios.props.AttributeReader<VALUETEMPLATE,OBJECT_TEMPLATE>)
    • org.proteios.props.ProtocolFileNameReader (implements org.proteios.props.AttributeReader<VALUETEMPLATE,OBJECT_TEMPLATE>)
    • org.proteios.props.ProtocolTypeNameReader
    • org.proteios.props.XTandemParameterFileNameReader (implements org.proteios.props.AttributeReader<VALUETEMPLATE,OBJECT_TEMPLATE>)
  • org.proteios.core.AbstractUpdateToSchemaVersion (implements org.proteios.core.UpdateToSchemaVersionInterface)
    • org.proteios.core.UpdateToSchemaVersion10 (implements org.proteios.core.UpdateToSchemaVersionInterface)
    • org.proteios.core.UpdateToSchemaVersion2 (implements org.proteios.core.UpdateToSchemaVersionInterface)
    • org.proteios.core.UpdateToSchemaVersion3 (implements org.proteios.core.UpdateToSchemaVersionInterface)
    • org.proteios.core.UpdateToSchemaVersion4 (implements org.proteios.core.UpdateToSchemaVersionInterface)
    • org.proteios.core.UpdateToSchemaVersion5 (implements org.proteios.core.UpdateToSchemaVersionInterface)
    • org.proteios.core.UpdateToSchemaVersion6 (implements org.proteios.core.UpdateToSchemaVersionInterface)
    • org.proteios.core.UpdateToSchemaVersion7 (implements org.proteios.core.UpdateToSchemaVersionInterface)
    • org.proteios.core.UpdateToSchemaVersion8 (implements org.proteios.core.UpdateToSchemaVersionInterface)
    • org.proteios.core.UpdateToSchemaVersion9 (implements org.proteios.core.UpdateToSchemaVersionInterface)
    • org.proteios.core.UpdateToSchemaVersionTmpl (implements org.proteios.core.UpdateToSchemaVersionInterface)
  • org.proteios.core.query.AddExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.query.Aggregations
  • org.proteios.io.AHit (implements org.proteios.core.Annotatable, org.proteios.io.HitInterface)
  • org.proteios.core.AliasKeyManager (implements javax.net.ssl.X509KeyManager)
  • org.proteios.core.query.AndRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.core.AnnotationBetweenRestriction
  • org.proteios.core.AnnotationInRestriction
  • org.proteios.core.query.Annotations
  • org.proteios.core.AnnotationSimpleRestriction
  • org.proteios.core.Annotator
  • org.proteios.core.Application
  • org.proteios.util.ArrayIterator<E> (implements java.util.Iterator<E>)
  • org.proteios.core.query.AscOrder (implements org.proteios.core.query.Order)
  • org.proteios.AttributeDefinition
  • org.proteios.core.authentication.AuthenticationInformation
  • org.proteios.core.Base64Coder
  • org.proteios.io.Base64Util
  • org.proteios.core.data.BasicData (implements org.proteios.core.data.IdentifiableData)
    • org.proteios.core.data.AnnotationData
    • org.proteios.core.data.AnnotationSetData
    • org.proteios.core.data.BioMaterialEventData
      • org.proteios.core.data.CreationEventData
      • org.proteios.core.data.GelImageAnalysisEventData
      • org.proteios.core.data.GelScanEventData
      • org.proteios.core.data.SeparationEventData
      • org.proteios.core.data.StainingEventData
      • org.proteios.core.data.UpdateEventData
    • org.proteios.core.data.DiskUsageData
    • org.proteios.core.data.FeatureData
    • org.proteios.core.data.FileTypeData (implements org.proteios.core.data.NameableData, org.proteios.core.data.SystemData)
    • org.proteios.core.data.GroupData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData, org.proteios.core.data.SystemData)
    • org.proteios.core.data.HardwareTypeData (implements org.proteios.core.data.NameableData, org.proteios.core.data.SystemData)
    • org.proteios.core.data.HitData
    • org.proteios.core.data.KeyData
      • org.proteios.core.data.ItemKeyData
      • org.proteios.core.data.ProjectKeyData
      • org.proteios.core.data.RoleKeyData
    • org.proteios.core.data.MessageData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData)
    • org.proteios.core.data.MimeTypeData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData)
    • org.proteios.core.data.NewsData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData)
    • org.proteios.core.data.OwnedData (implements org.proteios.core.data.OwnableData)
      • org.proteios.core.data.JobData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData)
      • org.proteios.core.data.ProjectData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData)
      • org.proteios.core.data.SharedData (implements org.proteios.core.data.ShareableData)
        • org.proteios.core.data.CommonData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData)
          • org.proteios.core.data.AcquisitionData
          • org.proteios.core.data.AnnotatedData (implements org.proteios.core.data.AnnotatableData)
            • org.proteios.core.data.BioMaterialData
              • org.proteios.core.data.BioSourceData
              • org.proteios.core.data.MeasuredBioMaterialData
                • org.proteios.core.data.ExtractData
                • org.proteios.core.data.LabeledExtractData
                • org.proteios.core.data.MeasuredAreaData
                • org.proteios.core.data.SampleData
            • org.proteios.core.data.DataProcessingStepData
            • org.proteios.core.data.FileData (implements org.proteios.core.data.CreationInterface, org.proteios.core.data.DiskConsumableData)
            • org.proteios.core.data.InstrumentConfigurationData (implements org.proteios.core.data.FileAttachableData)
              • org.proteios.core.data.HardwareConfigurationData
              • org.proteios.core.data.SoftwareConfigurationData
            • org.proteios.core.data.MascotParameterSetStorageData
            • org.proteios.core.data.OMSSAParameterSetStorageData
            • org.proteios.core.data.PeakListData (implements org.proteios.core.data.BatchableData)
            • org.proteios.core.data.PeakListSetData
            • org.proteios.core.data.PolyPeptideData
              • org.proteios.core.data.PeptideData
              • org.proteios.core.data.ProteinData
            • org.proteios.core.data.SearchResultData (implements java.lang.Comparable<T>)
            • org.proteios.core.data.SpectrumSearchData
            • org.proteios.core.data.XTandemParameterSetStorageData
          • org.proteios.core.data.AnnotationTypeData
          • org.proteios.core.data.ClientData
          • org.proteios.core.data.DigestParameterData
          • org.proteios.core.data.DirectoryData (implements org.proteios.core.data.CreationInterface, org.proteios.core.data.SystemData)
          • org.proteios.core.data.HardwareData
          • org.proteios.core.data.InputSpectraData
          • org.proteios.core.data.LabelData
          • org.proteios.core.data.ModificationData
            • org.proteios.core.data.ObservedModificationData
            • org.proteios.core.data.SearchModificationData
          • org.proteios.core.data.PluginConfigurationData
          • org.proteios.core.data.ProtocolData (implements org.proteios.core.data.FileAttachableData)
          • org.proteios.core.data.SearchDatabaseData
          • org.proteios.core.data.SoftwareData
        • org.proteios.core.data.PluginDefinitionData (implements org.proteios.core.data.RemovableData)
        • org.proteios.core.data.SeparationMethodData
          • org.proteios.core.data.GelElectrophoresisData
          • org.proteios.core.data.IPGData
          • org.proteios.core.data.LiquidChromatographyData
    • org.proteios.core.data.ParameterValueData<T>
      • org.proteios.core.data.BooleanParameterValueData
      • org.proteios.core.data.DateParameterValueData
      • org.proteios.core.data.DoubleParameterValueData
      • org.proteios.core.data.FileParameterValueData
      • org.proteios.core.data.FloatParameterValueData
      • org.proteios.core.data.IntegerParameterValueData
      • org.proteios.core.data.ItemParameterValueData
      • org.proteios.core.data.LongParameterValueData
      • org.proteios.core.data.StringParameterValueData
      • org.proteios.core.data.TextParameterValueData
    • org.proteios.core.data.PasswordData
    • org.proteios.core.data.PeakData (implements org.proteios.core.data.AnnotatableData, org.proteios.core.data.BatchableData)
    • org.proteios.core.data.PluginTypeData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData)
    • org.proteios.core.data.PrecursorData
    • org.proteios.core.data.ProtocolTypeData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData, org.proteios.core.data.SystemData)
    • org.proteios.core.data.QuotaData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData, org.proteios.core.data.SystemData)
    • org.proteios.core.data.QuotaTypeData (implements org.proteios.core.data.NameableData, org.proteios.core.data.SystemData)
    • org.proteios.core.data.RoleData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData, org.proteios.core.data.SystemData)
    • org.proteios.core.data.SchemaVersionData
    • org.proteios.core.data.SessionData
    • org.proteios.core.data.SettingData
      • org.proteios.core.data.ClientDefaultSettingData
      • org.proteios.core.data.GlobalDefaultSettingData
      • org.proteios.core.data.UserClientSettingData
      • org.proteios.core.data.UserDefaultSettingData
    • org.proteios.core.data.SoftwareTypeData (implements org.proteios.core.data.NameableData, org.proteios.core.data.SystemData)
    • org.proteios.core.data.UserData (implements org.proteios.core.data.NameableData, org.proteios.core.data.RemovableData, org.proteios.core.data.SystemData)
  • org.proteios.core.BasicItem<D> (implements org.proteios.core.Identifiable)
    • org.proteios.core.Annotation
    • org.proteios.core.AnnotationSet
    • org.proteios.core.BioMaterialEvent<D>
      • org.proteios.core.CreationEvent
      • org.proteios.core.GelImageAnalysisEvent
      • org.proteios.core.GelScanEvent
      • org.proteios.core.SeparationEvent
      • org.proteios.core.StainingEvent
      • org.proteios.core.UpdateEvent
    • org.proteios.core.DiskUsage
    • org.proteios.core.Feature
    • org.proteios.core.FileType (implements org.proteios.core.Nameable, org.proteios.core.SystemItem)
    • org.proteios.core.Group (implements org.proteios.core.Nameable, org.proteios.core.Removable, org.proteios.core.SystemItem)
    • org.proteios.core.HardwareType (implements org.proteios.core.Nameable, org.proteios.core.SystemItem)
    • org.proteios.core.Hit
    • org.proteios.core.Key<D>
      • org.proteios.core.ItemKey
      • org.proteios.core.ProjectKey
      • org.proteios.core.RoleKey (implements org.proteios.core.Nameable)
    • org.proteios.core.Message (implements org.proteios.core.Nameable, org.proteios.core.Removable)
    • org.proteios.core.MimeType (implements org.proteios.core.Nameable, org.proteios.core.Removable)
    • org.proteios.core.News (implements org.proteios.core.Nameable, org.proteios.core.Removable, org.proteios.core.Validatable)
    • org.proteios.core.OwnedItem<D> (implements org.proteios.core.Ownable)
      • org.proteios.core.Job (implements org.proteios.core.Nameable, org.proteios.core.Removable)
      • org.proteios.core.Project (implements org.proteios.core.Nameable, org.proteios.core.Removable)
      • org.proteios.core.SharedItem<D> (implements org.proteios.core.Shareable)
        • org.proteios.core.CommonItem<D> (implements org.proteios.core.Nameable, org.proteios.core.Removable)
          • org.proteios.core.Acquisition
          • org.proteios.core.AnnotatedItem<D> (implements org.proteios.core.Annotatable)
            • org.proteios.core.BioMaterial<D>
              • org.proteios.core.BioSource
              • org.proteios.core.MeasuredBioMaterial<D>
                • org.proteios.core.Extract
                • org.proteios.core.LabeledExtract
                • org.proteios.core.MeasuredArea
                • org.proteios.core.Sample
            • org.proteios.core.DataProcessingStep
            • org.proteios.core.File (implements org.proteios.core.DiskConsumable, org.proteios.core.Transactional)
            • org.proteios.core.InstrumentConfiguration<D> (implements org.proteios.core.FileAttachable)
              • org.proteios.core.HardwareConfiguration
              • org.proteios.core.SoftwareConfiguration
            • org.proteios.core.MascotParameterSetStorage
            • org.proteios.core.OMSSAParameterSetStorage
            • org.proteios.core.PeakList (implements java.lang.Comparable<T>)
            • org.proteios.core.PeakListSet
            • org.proteios.core.PolyPeptide<D>
              • org.proteios.core.Peptide
              • org.proteios.core.Protein
            • org.proteios.core.SearchResult (implements java.lang.Comparable<T>)
            • org.proteios.core.SpectrumSearch
            • org.proteios.core.XTandemParameterSetStorage
          • org.proteios.core.AnnotationType
          • org.proteios.core.Client
          • org.proteios.core.DigestParameter
          • org.proteios.core.Hardware
          • org.proteios.core.Label
          • org.proteios.core.Modification<D>
            • org.proteios.core.ObservedModification
            • org.proteios.core.SearchModification
          • org.proteios.core.PluginConfiguration
          • org.proteios.core.Protocol (implements org.proteios.core.FileAttachable)
          • org.proteios.core.SearchDatabase
          • org.proteios.core.Software
        • org.proteios.core.Directory (implements org.proteios.core.Nameable, org.proteios.core.Removable, org.proteios.core.SystemItem)
        • org.proteios.core.PluginDefinition (implements org.proteios.core.Removable)
        • org.proteios.core.SeparationMethod<D>
          • org.proteios.core.GelElectrophoresis
          • org.proteios.core.IPG
          • org.proteios.core.LiquidChromatography
    • org.proteios.core.Peak (implements org.proteios.core.Annotatable, java.lang.Comparable<T>)
    • org.proteios.core.PluginType (implements org.proteios.core.Nameable, org.proteios.core.Removable)
    • org.proteios.core.Precursor
    • org.proteios.core.ProtocolType (implements org.proteios.core.Nameable, org.proteios.core.Removable, org.proteios.core.SystemItem)
    • org.proteios.core.Quota (implements org.proteios.core.Nameable, org.proteios.core.Removable, org.proteios.core.SystemItem)
    • org.proteios.core.QuotaType (implements org.proteios.core.Nameable, org.proteios.core.SystemItem)
    • org.proteios.core.Role (implements org.proteios.core.Nameable, org.proteios.core.Removable, org.proteios.core.SystemItem)
    • org.proteios.core.Session
    • org.proteios.core.Setting<D>
      • org.proteios.core.GlobalDefaultSetting
    • org.proteios.core.SoftwareType (implements org.proteios.core.Nameable, org.proteios.core.SystemItem)
    • org.proteios.core.User (implements org.proteios.core.Nameable, java.security.Principal, org.proteios.core.Removable, org.proteios.core.SystemItem)
  • org.proteios.core.BatchedPropertyInfo
  • org.proteios.core.query.BetweenRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.util.ChainedProgressReporter (implements org.proteios.core.ProgressReporter)
  • org.proteios.util.jep.ChannelFunction (implements org.proteios.util.jep.JepExpressionFunction)
  • org.proteios.ClassDescriptor
  • java.lang.ClassLoader
    • org.proteios.util.JarClassLoader
  • org.proteios.util.ClassLocal<E>
  • org.proteios.core.ClassMetadataExposed
  • org.proteios.util.ClassUtil
  • org.proteios.io.ColumnPreferences
  • org.proteios.core.Config
  • org.proteios.util.ConsoleProgressReporter (implements org.proteios.core.ProgressReporter)
  • org.proteios.util.Coordinate
  • org.proteios.core.query.CountExpression (implements org.proteios.core.query.Expression)
  • org.proteios.io.mzdata.CvLookup
  • org.proteios.io.mzdata.CvParam
  • org.proteios.core.DataQuery<I>
  • org.proteios.core.DataResultIterator<I> (implements org.proteios.core.query.ResultIterator<I>)
  • org.proteios.core.DateUtil
  • org.proteios.core.DbControl
  • org.proteios.core.DefaultAttributeFilter (implements org.proteios.AttributeFilter)
  • org.proteios.core.query.DescOrder (implements org.proteios.core.query.Order)
  • java.util.Dictionary<K,V>
    • java.util.Hashtable<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • java.util.Properties
        • org.proteios.MascotPropertiesFile2
        • org.proteios.OMSSAPropertiesFile2
        • org.proteios.core.PreferencesFile
        • org.proteios.core.PropertiesFileHandler
        • org.proteios.XTandemPropertiesFile2
  • org.proteios.util.Diff3
  • org.proteios.core.query.DivideExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.DynamicResultIterator (implements org.proteios.core.query.SqlResultIterator)
  • org.proteios.util.Enumeration<K,V>
  • org.proteios.util.Enumeration.Entry<K,V>
  • org.proteios.core.query.EqRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.core.query.Expressions
  • org.proteios.core.query.ExpressionSelect (implements org.proteios.core.query.Select)
  • org.proteios.core.ExtendedProperties
  • org.proteios.core.ExtendedProperty
  • org.proteios.core.ExtendedPropertyAccessor (implements org.hibernate.property.PropertyAccessor)
  • org.proteios.core.FileAttributeFilter (implements org.proteios.AttributeFilter)
  • org.proteios.io.FileExtraUtil
  • org.proteios.io.FilenameParseUtil
  • org.proteios.core.FileNode
  • org.proteios.util.FileUtil
  • org.proteios.util.FlatFileParser
  • org.proteios.util.FlatFileParser.Data
  • org.proteios.util.FlatFileParser.Line
  • org.proteios.core.query.FloatExpression (implements org.proteios.core.query.Expression)
  • org.proteios.install.GetHostName
  • org.proteios.core.data.keyring.GroupGroups (implements java.io.Serializable)
  • org.proteios.core.GroupPermissions
  • org.proteios.core.query.GteqRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.core.query.GtRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.core.plugin.GuiContext
  • org.proteios.core.data.GuiContextData (implements java.io.Serializable)
  • org.proteios.core.HibernateUtil
  • org.proteios.core.HitsFilterForGelBasedProjects (implements org.proteios.AttributeFilter)
  • org.proteios.core.HitsFilterForNonGelBasedProjects (implements org.proteios.AttributeFilter)
  • org.proteios.core.query.Hql
  • org.proteios.core.query.HqlElementsExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.query.HqlEntityExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.query.HqlIndexExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.query.HqlInnerJoin (implements org.proteios.core.query.Join)
  • org.proteios.core.query.HqlLeftJoin (implements org.proteios.core.query.Join)
  • org.proteios.core.query.HqlPropertyExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.query.HqlRightJoin (implements org.proteios.core.query.Join)
  • org.proteios.install.InitDB
  • org.proteios.install.Input2File
  • org.proteios.core.query.InRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.core.Install
  • org.proteios.core.query.IntegerExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.IntegerUtil
  • org.proteios.core.ItemFactory
  • org.proteios.core.ItemQuery<I>
  • org.proteios.core.ItemResultIterator<I> (implements org.proteios.core.query.ResultIterator<I>)
  • org.proteios.core.ItemResultList<I>
  • org.proteios.util.jep.Jep
  • org.proteios.core.JobQueueManager
  • org.proteios.props.JobStatusReader (implements org.proteios.props.AttributeReader<VALUETEMPLATE,OBJECT_TEMPLATE>)
  • org.proteios.core.data.keyring.KeyPermission (implements java.lang.Comparable<T>)
    • org.proteios.core.data.keyring.GroupKeys (implements java.io.Serializable)
    • org.proteios.core.data.keyring.ProjectKeys (implements java.io.Serializable)
    • org.proteios.core.data.keyring.RoleKeys (implements java.io.Serializable)
    • org.proteios.core.data.keyring.UserKeys (implements java.io.Serializable)
  • org.proteios.core.query.LikeRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.util.jep.Log2Function (implements org.proteios.util.jep.JepExpressionFunction)
  • org.proteios.core.query.LogExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.LsidElement
  • org.proteios.core.LsidElement.SequenceRetriever
  • org.proteios.core.query.LteqRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.core.query.LtRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.io.MailUtil
  • org.proteios.core.data.MappingCoordinate (implements java.io.Serializable)
  • org.proteios.io.MascotParameterFileUtil (implements org.proteios.io.FileValidationInterface, org.proteios.io.MascotParameterFileUtilInterface)
  • org.proteios.io.MascotParameterSet
  • org.proteios.io.MascotParameterSetOptionsUtil
  • org.proteios.io.MascotServerIO
  • org.proteios.core.query.MaxExpression (implements org.proteios.core.query.Expression)
  • org.proteios.util.MD5
  • org.proteios.core.query.MeanExpression (implements org.proteios.core.query.Expression)
  • org.proteios.util.jep.MeanFunction (implements org.proteios.util.jep.JepFunction)
  • org.proteios.core.Metadata<C>
  • org.proteios.io.MgfFileReader (implements org.proteios.io.FileValidationInterface, org.proteios.io.PeakListFileInterface, org.proteios.io.SpectrumIdReaderInterface)
  • org.proteios.core.query.MinExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.MinimalAttributeFilter (implements org.proteios.AttributeFilter)
  • org.proteios.core.MinimalAttributeFilter2 (implements org.proteios.AttributeFilter)
  • org.proteios.core.MultiPermissions
  • org.proteios.core.query.MultiplyExpression (implements org.proteios.core.query.Expression)
  • org.proteios.util.MWPICalc
  • org.proteios.io.mzdata.MzDataExpCommon
    • org.proteios.io.mzdata.MzDataExpCommonDc
      • org.proteios.io.mzdata.MzDataExpCommonAnnotation
        • org.proteios.io.mzdata.MzDataExpCommonPeakList
          • org.proteios.io.mzdata.MzDataExpAcqSpecificationBlock
          • org.proteios.io.mzdata.MzDataExpAcquisitionBlock
          • org.proteios.io.mzdata.MzDataExpActivationBlock
          • org.proteios.io.mzdata.MzDataExpDataBlock
          • org.proteios.io.mzdata.MzDataExpIntenArrayBinaryBlock
          • org.proteios.io.mzdata.MzDataExpIonSelectionBlock
          • org.proteios.io.mzdata.MzDataExpMzArrayBinaryBlock
          • org.proteios.io.mzdata.MzDataExpPrecursorBlock
          • org.proteios.io.mzdata.MzDataExpPrecursorListBlock
          • org.proteios.io.mzdata.MzDataExpSpectrumBlock
          • org.proteios.io.mzdata.MzDataExpSpectrumDescBlock
          • org.proteios.io.mzdata.MzDataExpSpectrumInstrumentBlock
          • org.proteios.io.mzdata.MzDataExpSpectrumListBlock
          • org.proteios.io.mzdata.MzDataExpSpectrumSettingsBlock
        • org.proteios.io.mzdata.MzDataExpCommonPeakListSet
          • org.proteios.io.mzdata.MzDataExpAdminBlock
          • org.proteios.io.mzdata.MzDataExpAnalyzerBlock
          • org.proteios.io.mzdata.MzDataExpAnalyzerListBlock
          • org.proteios.io.mzdata.MzDataExpContactBlock
          • org.proteios.io.mzdata.MzDataExpDataProcessingBlock
          • org.proteios.io.mzdata.MzDataExpDescriptionBlock
          • org.proteios.io.mzdata.MzDataExpDetectorBlock
          • org.proteios.io.mzdata.MzDataExpInstrumentBlock
          • org.proteios.io.mzdata.MzDataExpInstrumentNameBlock
          • org.proteios.io.mzdata.MzDataExpMzDataBlock
          • org.proteios.io.mzdata.MzDataExpProcessingMethodBlock
          • org.proteios.io.mzdata.MzDataExpSampleNameBlock
          • org.proteios.io.mzdata.MzDataExpSoftwareBlock
          • org.proteios.io.mzdata.MzDataExpSourceBlock
          • org.proteios.io.mzdata.MzDataExpSourceFileBlock
  • org.proteios.io.mzdata.MzDataExporter
  • org.proteios.io.mzdata.MzDataImpCommon
    • org.proteios.io.mzdata.MzDataImpCommonDc
      • org.proteios.io.mzdata.MzDataImpCommonAnnotation
        • org.proteios.io.mzdata.MzDataImpCommonPeakList
          • org.proteios.io.mzdata.MzDataImpAcqSpecificationBlock
          • org.proteios.io.mzdata.MzDataImpAcquisitionBlock
          • org.proteios.io.mzdata.MzDataImpActivationBlock
          • org.proteios.io.mzdata.MzDataImpDataBlock
          • org.proteios.io.mzdata.MzDataImpIntenArrayBinaryBlock
          • org.proteios.io.mzdata.MzDataImpIonSelectionBlock
          • org.proteios.io.mzdata.MzDataImpMzArrayBinaryBlock
          • org.proteios.io.mzdata.MzDataImpPrecursorBlock
          • org.proteios.io.mzdata.MzDataImpPrecursorListBlock
          • org.proteios.io.mzdata.MzDataImpSpectrumBlock
          • org.proteios.io.mzdata.MzDataImpSpectrumDescBlock
          • org.proteios.io.mzdata.MzDataImpSpectrumInstrumentBlock
          • org.proteios.io.mzdata.MzDataImpSpectrumListBlock
          • org.proteios.io.mzdata.MzDataImpSpectrumSettingsBlock
        • org.proteios.io.mzdata.MzDataImpCommonPeakListSet
          • org.proteios.io.mzdata.MzDataImpAdminBlock
          • org.proteios.io.mzdata.MzDataImpAnalyzerBlock
          • org.proteios.io.mzdata.MzDataImpAnalyzerListBlock
          • org.proteios.io.mzdata.MzDataImpContactBlock
          • org.proteios.io.mzdata.MzDataImpDataProcessingBlock
          • org.proteios.io.mzdata.MzDataImpDescriptionBlock
          • org.proteios.io.mzdata.MzDataImpDetectorBlock
          • org.proteios.io.mzdata.MzDataImpInstrumentBlock
          • org.proteios.io.mzdata.MzDataImpInstrumentNameBlock
          • org.proteios.io.mzdata.MzDataImpInstrumentSourceBlock
          • org.proteios.io.mzdata.MzDataImpMzDataBlock
          • org.proteios.io.mzdata.MzDataImpProcessingMethodBlock
          • org.proteios.io.mzdata.MzDataImpSampleNameBlock
          • org.proteios.io.mzdata.MzDataImpSoftwareBlock
          • org.proteios.io.mzdata.MzDataImpSourceFileBlock
  • org.proteios.io.mzdata.MzDataImporter
  • org.proteios.io.mzdata.MzDataImportTest
  • org.proteios.io.MzMLFileReader (implements org.proteios.io.FileValidationInterface, org.proteios.io.PeakListFileInterface, org.proteios.io.SpectrumFileContactReaderInterface, org.proteios.io.SpectrumFileInstrumentReaderInterface, org.proteios.io.SpectrumIdReaderInterface)
  • org.proteios.core.NameableUtil
  • org.proteios.core.query.NegateExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.query.NeqRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.io.NotificationConfiguration
  • org.proteios.core.query.NotRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.io.OMSSAParameterFileUtil (implements org.proteios.io.FileValidationInterface, org.proteios.io.OMSSAParameterFileUtilInterface)
  • org.proteios.io.OMSSAParameterSet
  • org.proteios.io.OMSSAParameterSetOptionsUtil
  • org.proteios.core.query.Orders
  • org.proteios.core.query.OrRestriction (implements org.proteios.core.query.Restriction)
  • org.proteios.core.OwnableUtil
  • org.proteios.core.query.ParameterExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.ParameterType<T>
    • org.proteios.core.BooleanParameterType
    • org.proteios.core.DateParameterType
    • org.proteios.core.DoubleParameterType
    • org.proteios.core.FileParameterType
    • org.proteios.core.FloatParameterType
    • org.proteios.core.IntegerParameterType
    • org.proteios.core.ItemParameterType<T>
    • org.proteios.core.LongParameterType
    • org.proteios.core.StringParameterType
  • org.proteios.install.PasswordField
  • org.proteios.core.Path
  • org.proteios.io.PeakListFileImpl (implements org.proteios.io.FileValidationInterface, org.proteios.io.PeakListFileInterface, org.proteios.io.SpectrumFileContactReaderInterface, org.proteios.io.SpectrumFileInstrumentReaderInterface, org.proteios.io.SpectrumIdReaderInterface)
  • org.proteios.io.PeakListFileValidationFactory
  • org.proteios.io.PiumsPepfilReader (implements org.proteios.io.FileValidationInterface)
  • org.proteios.io.PklFileReader (implements org.proteios.io.FileValidationInterface, org.proteios.io.PeakListFileInterface, org.proteios.io.SpectrumIdReaderInterface)
  • org.proteios.core.PluginConfigurationRequest
  • org.proteios.core.PluginExecutionRequest
  • org.proteios.core.PluginParameter<T>
  • org.proteios.core.PluginResponse
  • org.proteios.core.authentication.POP3Authenticator (implements org.proteios.core.authentication.Authenticator)
  • org.proteios.io.PrecursorSelectedIon
  • org.proteios.core.data.keyring.ProjectPermission (implements java.lang.Comparable<T>)
    • org.proteios.core.data.keyring.GroupProjects (implements java.io.Serializable)
    • org.proteios.core.data.keyring.UserProjects (implements java.io.Serializable)
  • org.proteios.core.ProjectPermissions
  • org.proteios.core.PropertyFilter
  • org.proteios.core.data.PropertyFilterData
  • org.proteios.core.QueryFactory
  • org.proteios.core.QueryFactory.QueryState
  • org.proteios.core.data.QuotaIndex (implements java.io.Serializable)
  • java.io.Reader (implements java.io.Closeable, java.lang.Readable)
    • java.io.InputStreamReader
      • org.proteios.io.MascotFileReader (implements org.proteios.io.FileTypeInterface, org.proteios.io.FileValidationInterface, org.proteios.io.IdentificationFileInterface)
  • org.proteios.core.RealTable
  • org.proteios.util.RemovableUtil
  • org.proteios.install.Replace
  • org.proteios.core.RequestInformation
  • org.proteios.core.query.Restrictions
  • org.proteios.io.RobotFileImpl (implements org.proteios.io.FileValidationInterface, org.proteios.io.RobotFileInterface)
  • org.proteios.io.RobotFileSpotXY
  • org.proteios.method.write.SaveUserRolesMethod
  • org.proteios.core.SchemaVersion
  • org.proteios.core.query.SelectedExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.query.Selects
  • org.proteios.core.SessionControl
  • org.proteios.core.ShareableUtil
  • org.proteios.util.ShareableUtil
  • org.proteios.core.authentication.SimpleAuthenticator (implements org.proteios.core.authentication.Authenticator)
  • org.proteios.core.SimpleProgressReporter (implements org.proteios.core.ProgressReporter)
    • org.proteios.core.SimpleAbsoluteProgressReporter (implements org.proteios.core.AbsoluteProgressReporter)
  • org.proteios.io.SpectrumFileAnalyzer (implements org.proteios.io.SpectrumFileAnalyzerInterface)
  • org.proteios.io.SpectrumFileContact (implements org.proteios.io.SpectrumFileContactInterface)
  • org.proteios.io.SpectrumFileInstrument (implements org.proteios.io.SpectrumFileInstrumentInterface)
  • org.proteios.io.SpectrumImpl (implements org.proteios.io.SpectrumInterface)
  • org.proteios.io.SpectrumPrecursor
  • org.proteios.core.query.SqrtExpression (implements org.proteios.core.query.Expression)
  • org.proteios.io.StringPair (implements org.proteios.io.StringPairInterface)
  • org.proteios.core.StringUtil
  • org.proteios.core.query.SubtractExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.query.SumExpression (implements org.proteios.core.query.Expression)
  • org.proteios.core.SystemItems
  • org.proteios.io.TablePreferences
  • org.proteios.io.TablePreferencesConfiguration
  • org.proteios.io.TagFactory
    • org.proteios.util.SchemaFactory
    • org.proteios.io.TandemFactory
  • org.proteios.io.TandemFileReader (implements org.proteios.io.IdentificationFileInterface)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.proteios.core.authentication.AuthenticationException
        • org.proteios.core.authentication.InvalidPasswordException
        • org.proteios.core.authentication.UnknownLoginException
      • org.proteios.method.MethodException
      • java.lang.RuntimeException
        • org.proteios.core.BaseException
          • org.proteios.core.ConfigurationException
          • org.proteios.core.ConnectionClosedException
          • org.proteios.core.DatabaseException
          • org.proteios.core.DetachedItemException
          • org.proteios.core.InvalidDataException
            • org.proteios.core.InvalidAnnotationException
            • org.proteios.core.InvalidPathException
            • org.proteios.core.InvalidUseOfNullException
            • org.proteios.core.ItemAlreadyExistsException
            • org.proteios.core.ItemNotFoundException
            • org.proteios.core.NumberOutOfRangeException
            • org.proteios.core.ParameterException
            • org.proteios.core.QuotaException
            • org.proteios.core.StringTooLongException
          • org.proteios.core.InvalidPasswordException
          • org.proteios.core.PermissionDeniedException
            • org.proteios.core.AccountExpiredException
            • org.proteios.core.AlreadyLoggedInException
            • org.proteios.core.ItemInUseException
            • org.proteios.core.ItemModifiedException
            • org.proteios.core.NotLoggedInException
  • java.util.TimerTask (implements java.lang.Runnable)
    • org.proteios.core.JobQueueScheduler
  • org.proteios.util.ToStringComparator<T> (implements java.util.Comparator<T>)
  • org.proteios.util.Tree<E> (implements java.util.Collection<E>)
  • org.proteios.util.Tree.Entry<E>
  • org.proteios.TypeUtil
  • org.proteios.core.Update
  • org.proteios.core.UpdatesFactory
  • org.proteios.core.data.UsedQuantity (implements java.io.Serializable)
  • org.proteios.core.data.keyring.UserGroups (implements java.io.Serializable)
  • org.proteios.io.mzdata.UserParam
  • org.proteios.core.UserPermissions
  • org.proteios.core.data.keyring.UserRoles (implements java.io.Serializable)
  • org.proteios.install.Webclient
  • org.proteios.io.XMLCrudeWriter3Impl (implements org.proteios.io.XMLCrudeWriter, org.proteios.io.XMLCrudeWriter3)
  • org.proteios.io.XMLCrudeWriterImpl (implements org.proteios.io.XMLCrudeWriter)
    • org.proteios.io.XMLCrudeWriter2Impl (implements org.proteios.io.XMLCrudeWriter2)
  • org.proteios.io.XMLExportUtil
  • org.proteios.io.XMLImportUtil
  • org.proteios.io.XMLReaderUtil
  • org.proteios.io.XMLTag
    • org.proteios.io.Tag
      • org.proteios.util.SchemaFactory.All
      • org.proteios.util.SchemaFactory.Annotation
      • org.proteios.util.SchemaFactory.Any
      • org.proteios.util.SchemaFactory.AnyAttribute
      • org.proteios.util.SchemaFactory.Appinfo
      • org.proteios.util.SchemaFactory.Attribute
      • org.proteios.util.SchemaFactory.AttributeGroup
      • org.proteios.util.SchemaFactory.Choice
      • org.proteios.util.SchemaFactory.ComplexContent
      • org.proteios.util.SchemaFactory.ComplexType
      • org.proteios.util.SchemaFactory.Documentation
      • org.proteios.util.SchemaFactory.Element
      • org.proteios.util.SchemaFactory.Enumeration
      • org.proteios.util.SchemaFactory.Extension
      • org.proteios.util.SchemaFactory.Field
      • org.proteios.util.SchemaFactory.fractionDigits
      • org.proteios.util.SchemaFactory.Group
      • org.proteios.util.SchemaFactory.Import
      • org.proteios.util.SchemaFactory.Include
      • org.proteios.util.SchemaFactory.Key
      • org.proteios.util.SchemaFactory.KeyRef
      • org.proteios.util.SchemaFactory.Length
      • org.proteios.util.SchemaFactory.List
      • org.proteios.util.SchemaFactory.MaxExclusive
      • org.proteios.util.SchemaFactory.maxLength
      • org.proteios.util.SchemaFactory.MinExclusive
      • org.proteios.util.SchemaFactory.minLength
      • org.proteios.util.SchemaFactory.Notation
      • org.proteios.util.SchemaFactory.Pattern
      • org.proteios.util.SchemaFactory.Redefine
      • org.proteios.util.SchemaFactory.Restriction
      • org.proteios.util.SchemaFactory.Restriction1
      • org.proteios.util.SchemaFactory.Schema
      • org.proteios.util.SchemaFactory.Selector
      • org.proteios.util.SchemaFactory.Sequence
      • org.proteios.util.SchemaFactory.SimpleContent
      • org.proteios.util.SchemaFactory.SimpleType
      • org.proteios.util.SchemaFactory.totalDigits
      • org.proteios.util.SchemaFactory.Union
      • org.proteios.util.SchemaFactory.Unique
      • org.proteios.util.SchemaFactory.WhiteSpace
      • org.proteios.io.TandemFactory.BioML
      • org.proteios.io.TandemFactory.Protein
    • org.proteios.io.TandemFactory.ModelGroup
    • org.proteios.io.TandemFactory.SpectrumPathNote
  • org.proteios.util.XMLUtil
  • org.proteios.io.XMLValidator
  • org.proteios.io.XMLValidatorErrorHandler (implements org.xml.sax.ErrorHandler)
  • org.proteios.io.XMLValidatorLazyErrorHandler (implements org.xml.sax.ErrorHandler)
  • org.proteios.util.XsdToTagFactory
  • org.proteios.io.XTandemParameterFileUtil (implements org.proteios.io.FileValidationInterface, org.proteios.io.XTandemParameterFileUtilInterface)
  • org.proteios.io.XTandemParameterSet
  • org.proteios.io.XTandemParameterSetOptionsUtil
  • org.proteios.XYCoordinate

Interface Hierarchy

• org.proteios.core.AbortableJobQueueReadOnlyInterface
  • org.proteios.core.AbortableJobQueueInterface
    • org.proteios.core.ManageableJobQueueInterface (also extends org.proteios.core.ManageableJobQueueReadOnlyInterface)
  • org.proteios.core.ManageableJobQueueInterface (also extends org.proteios.core.AbortableJobQueueInterface, org.proteios.core.ManageableJobQueueReadOnlyInterface)
• org.proteios.core.AbortablePluginInterface
• org.proteios.core.plugin.About
• org.proteios.core.AccessControlled
  • org.proteios.core.DiskConsumable (also extends org.proteios.core.Controlled, org.proteios.core.Ownable)
  • org.proteios.core.FileAttachable
  • org.proteios.core.Identifiable
    • org.proteios.core.DiskConsumable (also extends org.proteios.core.Controlled, org.proteios.core.Ownable)
    • org.proteios.core.FileAttachable
    • org.proteios.core.Nameable
    • org.proteios.core.Ownable
      • org.proteios.core.DiskConsumable (also extends org.proteios.core.Controlled)
      • org.proteios.core.Shareable
    • org.proteios.core.Removable
    • org.proteios.core.Shareable
    • org.proteios.core.SystemItem
  • org.proteios.core.Nameable
  • org.proteios.core.Ownable
    • org.proteios.core.DiskConsumable (also extends org.proteios.core.Controlled)
    • org.proteios.core.Shareable
  • org.proteios.core.Removable
  • org.proteios.core.Shareable
  • org.proteios.core.SystemItem
• org.proteios.core.Annotatable
• org.proteios.AttributeFilter
• org.proteios.props.AttributeReader<VALUETEMPLATE,OBJECT_TEMPLATE>
• org.proteios.core.authentication.Authenticator
• org.proteios.core.Batcher
• org.proteios.core.Controlled
  • org.proteios.core.DiskConsumable (also extends org.proteios.core.Ownable)
  • org.proteios.core.Transactional
  • org.proteios.core.Validatable
• org.proteios.core.data.CreationInterface
• org.proteios.io.ExtensionDisableInterface
• org.proteios.io.FileTypeInterface
• org.proteios.io.FileValidationInterface
• org.proteios.io.HitInterface
• org.proteios.core.data.IdentifiableData
  • org.proteios.core.data.AnnotatableData
  • org.proteios.core.data.BatchableData
  • org.proteios.core.data.DiskConsumableData
  • org.proteios.core.data.ExtendableData
  • org.proteios.core.data.FileAttachableData
  • org.proteios.core.data.NameableData
  • org.proteios.core.data.OwnableData
    • org.proteios.core.data.DiskConsumableData
    • org.proteios.core.data.ShareableData
  • org.proteios.core.data.RemovableData
  • org.proteios.core.data.ShareableData
  • org.proteios.core.data.SystemData
• org.proteios.io.IdentificationFileInterface
• java.lang.Iterable<T>
  • java.util.Collection<E>
    • java.util.List<E>
      • org.proteios.core.query.ResultList<I> (also extends org.proteios.core.query.QueryResult)
        • org.proteios.core.query.SqlResultList<I>
      • org.proteios.core.query.SqlResultList<I>
    • org.proteios.core.query.ResultList<I> (also extends java.util.List<E>, org.proteios.core.query.QueryResult)
      • org.proteios.core.query.SqlResultList<I>
    • org.proteios.core.query.SqlResultList<I>
  • java.util.List<E>
    • org.proteios.core.query.ResultList<I> (also extends org.proteios.core.query.QueryResult)
      • org.proteios.core.query.SqlResultList<I>
    • org.proteios.core.query.SqlResultList<I>
  • org.proteios.core.query.ResultList<I> (also extends java.util.List<E>, org.proteios.core.query.QueryResult)
    • org.proteios.core.query.SqlResultList<I>
  • org.proteios.core.query.SqlResultList<I>
• java.util.Iterator<E>
  • org.proteios.core.query.ResultIterator<I> (also extends org.proteios.core.query.QueryResult)
    • org.proteios.core.query.SqlResultIterator
  • org.proteios.core.query.SqlResultIterator
• org.proteios.core.ManageableJobQueueReadOnlyInterface
  • org.proteios.core.ManageableJobQueueInterface (also extends org.proteios.core.AbortableJobQueueInterface)
• org.proteios.io.MascotParameterFileUtilInterface
• org.proteios.io.OMSSAParameterFileUtilInterface
• org.proteios.core.plugin.ParameterValues
• org.proteios.io.PeakListFileInterface
• org.proteios.io.PickFileInterface
• org.proteios.core.plugin.Plugin
  • org.proteios.core.plugin.AutoDetectingImporter
  • org.proteios.core.plugin.InteractivePlugin
• org.nfunk.jep.function.PostfixMathCommandI
  • org.proteios.util.jep.JepExpressionFunction
  • org.proteios.util.jep.JepFunction
    • org.proteios.util.jep.JepExpressionFunction
• org.proteios.core.ProgressReporter
  • org.proteios.core.AbsoluteProgressReporter
• org.proteios.core.query.Query
  • org.proteios.core.query.EntityQuery
  • org.proteios.core.query.HqlQuery
    • org.proteios.core.query.EntityQuery
  • org.proteios.core.query.SqlQuery
• org.proteios.core.query.QueryElement
  • org.proteios.core.query.Expression
  • org.proteios.core.query.Join
  • org.proteios.core.query.Order
  • org.proteios.core.query.Restriction
  • org.proteios.core.query.Select
• org.proteios.core.query.QueryResult
  • org.proteios.core.query.ResultIterator<I> (also extends java.util.Iterator<E>)
    • org.proteios.core.query.SqlResultIterator
  • org.proteios.core.query.ResultList<I> (also extends java.util.List<E>)
    • org.proteios.core.query.SqlResultList<I>
  • org.proteios.core.query.SqlResultIterator
  • org.proteios.core.query.SqlResultList<I>
• org.proteios.core.plugin.Request
• org.proteios.core.plugin.Response
• org.proteios.io.RobotFileInterface
• org.proteios.io.SpectrumFileAnalyzerInterface
• org.proteios.io.SpectrumFileContactInterface
• org.proteios.io.SpectrumFileContactReaderInterface
• org.proteios.io.SpectrumFileInstrumentInterface
• org.proteios.io.SpectrumFileInstrumentReaderInterface
• org.proteios.io.SpectrumIdReaderInterface
• org.proteios.io.SpectrumInterface
• org.proteios.core.query.SqlResult
• org.proteios.io.StringPairInterface
• org.proteios.core.UpdateToSchemaVersionInterface
• org.proteios.io.XMLCrudeWriter
  • org.proteios.io.XMLCrudeWriter2
    • org.proteios.io.XMLCrudeWriter3
  • org.proteios.io.XMLCrudeWriter3
• org.proteios.io.XTandemParameterFileUtilInterface

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.proteios.core.File.Action
    • org.proteios.core.Operator
    • org.proteios.core.Include
    • org.proteios.core.SearchModification.TerminalSpecificity
    • org.proteios.core.Job.Type
    • org.proteios.core.Job.Status
    • org.proteios.core.Job.ExecutionTime
    • org.proteios.core.Transactional.Action
    • org.proteios.core.Permission
    • org.proteios.core.Item
    • org.proteios.core.Path.Type
    • org.proteios.core.Location
    • org.proteios.core.SortOrder
    • org.proteios.core.Type
    • org.proteios.core.plugin.Response.Status
    • org.proteios.core.plugin.GuiContext.Type
    • org.proteios.core.plugin.Plugin.MainType
    • org.proteios.core.query.QueryType
    • org.proteios.core.query.JoinType
    • org.proteios.io.SpectrumPrecursor.FragmentationType
    • org.proteios.io.NotificationConfiguration.Mode
    • org.proteios.io.TablePreferencesConfiguration.Mode
    • org.proteios.util.FlatFileParser.LineType