org.proteios.io
Interfaces 
ExtensionDisableInterface
FileTypeInterface
FileValidationInterface
HitInterface
IdentificationFileInterface
MascotParameterFileUtilInterface
OMSSAParameterFileUtilInterface
PeakListFileInterface
PickFileInterface
RobotFileInterface
SpectrumFileAnalyzerInterface
SpectrumFileContactInterface
SpectrumFileContactReaderInterface
SpectrumFileInstrumentInterface
SpectrumFileInstrumentReaderInterface
SpectrumIdReaderInterface
SpectrumInterface
StringPairInterface
XMLCrudeWriter
XMLCrudeWriter2
XMLCrudeWriter3
XTandemParameterFileUtilInterface
Classes 
AHit
Base64Util
ColumnPreferences
FileExtraUtil
FilenameParseUtil
MailUtil
MascotFileReader
MascotParameterFileUtil
MascotParameterSet
MascotParameterSetOptionsUtil
MascotServerIO
MgfFileReader
MzMLFileReader
NotificationConfiguration
OMSSAParameterFileUtil
OMSSAParameterSet
OMSSAParameterSetOptionsUtil
PeakListFileImpl
PeakListFileValidationFactory
PiumsPepfilReader
PklFileReader
PrecursorSelectedIon
RobotFileImpl
RobotFileSpotXY
SpectrumFileAnalyzer
SpectrumFileContact
SpectrumFileInstrument
SpectrumImpl
SpectrumPrecursor
StringPair
TablePreferences
TablePreferencesConfiguration
Tag
TagFactory
TandemFactory
TandemFileReader
XMLCrudeWriter2Impl
XMLCrudeWriter3Impl
XMLCrudeWriterImpl
XMLExportUtil
XMLImportUtil
XMLReaderUtil
XMLTag
XMLValidator
XMLValidatorErrorHandler
XMLValidatorLazyErrorHandler
XTandemParameterFileUtil
XTandemParameterSet
XTandemParameterSetOptionsUtil
Enums 
NotificationConfiguration.Mode
SpectrumPrecursor.FragmentationType
TablePreferencesConfiguration.Mode