org.proteios.io.mzdata
Class MzDataExpSpectrumDescBlock

java.lang.Object
  org.proteios.io.mzdata.MzDataExpCommon
      org.proteios.io.mzdata.MzDataExpCommonDc
          org.proteios.io.mzdata.MzDataExpCommonAnnotation
              org.proteios.io.mzdata.MzDataExpCommonPeakList
                  org.proteios.io.mzdata.MzDataExpSpectrumDescBlock

public class MzDataExpSpectrumDescBlock
extends MzDataExpCommonPeakList

This class processes a "spectrumDesc" XML block in an mzData file. This class supports export of mzData files from Proteios. An mzData file contains information on a mass spectrometry experiment. Given a Proteios peakListSet, MzDataExporter fetches stored data related to this peakListSet and stores it in an mzData file.

Version:

2.0

Author:

Olle

Last modified

$Date: 2006-09-19 11:38:54 +0200 (Tue, 19 Sep 2006) $

Field Summary

Fields inherited from class org.proteios.io.mzdata.MzDataExpCommonDc

anna, dc, factory

Fields inherited from class org.proteios.io.mzdata.MzDataExpCommon

log

Constructor Summary

MzDataExpSpectrumDescBlock(SessionControl sc)
Default constructor.

Method Summary

String	getSpectrumDescComment() Get the spectrumDescComment.
void	setSpectrumDescComment(String spectrumDescComment) Set the spectrumDescComment.
void	write(XMLCrudeWriter xmlCrudeWriter, PeakList peakList) Creates a spectrumDesc block.

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommonPeakList

getPeakList, setPeakList

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommonAnnotation

createAddedParamAnnotationType, createAnnotationType, createCvLookupAnnotationType, createCvParamAnnotationType, createUserParamAnnotationType, fetchAddedParamAnnotationType, fetchAnnotation, fetchCvLookupAnnotation, fetchCvLookupAnnotationList, fetchCvLookupAnnotationType, fetchCvParamAnnotation, fetchCvParamAnnotationList, fetchUserParamAnnotation, fetchUserParamAnnotationList, obtainAddedParamAnnotationType, obtainCvLookupAnnotationType, storeAnnotation, storeCvLookupAnnotation, storeCvParamAnnotation, storeUserParamAnnotation

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommonDc

enableAnnotator, enableDbControl, enableDbControl, getDbControl, getSessionControl, setDbControl

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommon

getBlockTagName, setBlockTagName, write, writeAttribute, writeEndTag, writeNamespace, writeSimpleElementPair, writeSimpleElementPair, writeSingleElementEnd, writeStartElement, writeStartElementEnd, writeStartListTag, writeStartTag, zeroPad, zeroPad, zeroPad

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MzDataExpSpectrumDescBlock

public MzDataExpSpectrumDescBlock(SessionControl sc)

Default constructor.

Parameters:

sc -

Method Detail

getSpectrumDescComment

public String getSpectrumDescComment()

Get the spectrumDescComment.

Returns:

spectrumDescComment String the spectrumDescComment

setSpectrumDescComment

public void setSpectrumDescComment(String spectrumDescComment)

Set the spectrumDescComment.

Parameters:

spectrumDescComment - String the spectrumDescComment to set.

write

public void write(XMLCrudeWriter xmlCrudeWriter,
                  PeakList peakList)
           throws javax.xml.stream.XMLStreamException

Creates a spectrumDesc block.

Parameters:

xmlCrudeWriter - the XMLCrudeWriter instance to use.

peakList - PeakList peakList (spectrum)

Throws:

javax.xml.stream.XMLStreamException - If there is an XML Stream related error