org.proteios.io.mzdata
Class MzDataExpContactBlock

java.lang.Object
  org.proteios.io.mzdata.MzDataExpCommon
      org.proteios.io.mzdata.MzDataExpCommonDc
          org.proteios.io.mzdata.MzDataExpCommonAnnotation
              org.proteios.io.mzdata.MzDataExpCommonPeakListSet
                  org.proteios.io.mzdata.MzDataExpContactBlock

public class MzDataExpContactBlock
extends MzDataExpCommonPeakListSet

This class processes a "contact" XML block in an mzData file. This class supports export of mzData files from Proteios. An mzData file contains information on a mass spectrometry experiment. Given a Proteios peakListSet, MzDataExporter fetches stored data related to this peakListSet and stores it in an mzData file.

Version:

2.0

Author:

Olle

Last modified

$Date: 2006-10-25 14:40:28 +0200 (Wed, 25 Oct 2006) $

Field Summary

Fields inherited from class org.proteios.io.mzdata.MzDataExpCommonDc

anna, dc, factory

Fields inherited from class org.proteios.io.mzdata.MzDataExpCommon

log

Constructor Summary

MzDataExpContactBlock(SessionControl sc)
Default constructor.

Method Summary

void	fetchPeakListSetAnnotations(PeakListSet peakListSet) Fetches variable values stored as annotations for peakListSet.
String	getContactInfo() Get the contactInfo.
String	getContactInstitution() Get the contactInstitution.
String	getContactName() Get the contactName.
void	setContactInfo(String contactInfo) Set the contactInfo.
void	setContactInstitution(String contactInstitution) Set the contactInstitution.
void	setContactName(String contactName) Set the contactName.
void	write(XMLCrudeWriter xmlCrudeWriter, PeakListSet peakListSet) Creates a contact block.

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommonPeakListSet

getPeakListSet, setPeakListSet

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommonAnnotation

createAddedParamAnnotationType, createAnnotationType, createCvLookupAnnotationType, createCvParamAnnotationType, createUserParamAnnotationType, fetchAddedParamAnnotationType, fetchAnnotation, fetchCvLookupAnnotation, fetchCvLookupAnnotationList, fetchCvLookupAnnotationType, fetchCvParamAnnotation, fetchCvParamAnnotationList, fetchUserParamAnnotation, fetchUserParamAnnotationList, obtainAddedParamAnnotationType, obtainCvLookupAnnotationType, storeAnnotation, storeCvLookupAnnotation, storeCvParamAnnotation, storeUserParamAnnotation

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommonDc

enableAnnotator, enableDbControl, enableDbControl, getDbControl, getSessionControl, setDbControl

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommon

getBlockTagName, setBlockTagName, write, writeAttribute, writeEndTag, writeNamespace, writeSimpleElementPair, writeSimpleElementPair, writeSingleElementEnd, writeStartElement, writeStartElementEnd, writeStartListTag, writeStartTag, zeroPad, zeroPad, zeroPad

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MzDataExpContactBlock

public MzDataExpContactBlock(SessionControl sc)

Default constructor.

Method Detail

getContactName

public String getContactName()

Get the contactName.

Returns:

contactName String the contactName

setContactName

public void setContactName(String contactName)

Set the contactName.

Parameters:

contactName - String the contactName to set.

getContactInstitution

public String getContactInstitution()

Get the contactInstitution.

Returns:

contactInstitution String the contactInstitution

setContactInstitution

public void setContactInstitution(String contactInstitution)

Set the contactInstitution.

Parameters:

contactInstitution - String the contactInstitution to set.

getContactInfo

public String getContactInfo()

Get the contactInfo.

Returns:

contactInfo String the contactInfo

setContactInfo

public void setContactInfo(String contactInfo)

Set the contactInfo.

Parameters:

contactInfo - String the contactInfo to set.

write

public void write(XMLCrudeWriter xmlCrudeWriter,
                  PeakListSet peakListSet)
           throws javax.xml.stream.XMLStreamException

Creates a contact block.

Parameters:

xmlCrudeWriter - the XMLCrudeWriter instance to use.

peakListSet - PeakListSet peakListSet used

Throws:

javax.xml.stream.XMLStreamException - If there is an XML Stream related error

fetchPeakListSetAnnotations

public void fetchPeakListSetAnnotations(PeakListSet peakListSet)

Fetches variable values stored as annotations for peakListSet.

Parameters:

peakListSet - PeakListSet peakListSet used