org.proteios.io.mzdata
Class MzDataExpCommonPeakListSet

java.lang.Object
  org.proteios.io.mzdata.MzDataExpCommon
      org.proteios.io.mzdata.MzDataExpCommonDc
          org.proteios.io.mzdata.MzDataExpCommonAnnotation
              org.proteios.io.mzdata.MzDataExpCommonPeakListSet

Direct Known Subclasses:

MzDataExpAdminBlock, MzDataExpAnalyzerBlock, MzDataExpAnalyzerListBlock, MzDataExpContactBlock, MzDataExpDataProcessingBlock, MzDataExpDescriptionBlock, MzDataExpDetectorBlock, MzDataExpInstrumentBlock, MzDataExpInstrumentNameBlock, MzDataExpMzDataBlock, MzDataExpProcessingMethodBlock, MzDataExpSampleNameBlock, MzDataExpSoftwareBlock, MzDataExpSourceBlock, MzDataExpSourceFileBlock

public class MzDataExpCommonPeakListSet
extends MzDataExpCommonAnnotation

This class supports export of mzData files from Proteios. An mzData file contains information on a mass spectrometry experiment. Given a Proteios peakListSet, MzDataExporter fetches stored data related to this peakListSet and stores it in an mzData file.

Version:

2.0

Author:

Olle

Last modified

$Date: 2006-09-19 11:38:54 +0200 (Tue, 19 Sep 2006) $

Field Summary

Fields inherited from class org.proteios.io.mzdata.MzDataExpCommonDc

anna, dc, factory

Fields inherited from class org.proteios.io.mzdata.MzDataExpCommon

log

Constructor Summary

MzDataExpCommonPeakListSet(SessionControl sc)
Default constructor.

Method Summary

PeakListSet	getPeakListSet() Get the PeakListSet.
void	setPeakListSet(PeakListSet peakListSet) Set the PeakListSet.

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommonAnnotation

createAddedParamAnnotationType, createAnnotationType, createCvLookupAnnotationType, createCvParamAnnotationType, createUserParamAnnotationType, fetchAddedParamAnnotationType, fetchAnnotation, fetchCvLookupAnnotation, fetchCvLookupAnnotationList, fetchCvLookupAnnotationType, fetchCvParamAnnotation, fetchCvParamAnnotationList, fetchUserParamAnnotation, fetchUserParamAnnotationList, obtainAddedParamAnnotationType, obtainCvLookupAnnotationType, storeAnnotation, storeCvLookupAnnotation, storeCvParamAnnotation, storeUserParamAnnotation

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommonDc

enableAnnotator, enableDbControl, enableDbControl, getDbControl, getSessionControl, setDbControl

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommon

getBlockTagName, setBlockTagName, write, writeAttribute, writeEndTag, writeNamespace, writeSimpleElementPair, writeSimpleElementPair, writeSingleElementEnd, writeStartElement, writeStartElementEnd, writeStartListTag, writeStartTag, zeroPad, zeroPad, zeroPad

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MzDataExpCommonPeakListSet

public MzDataExpCommonPeakListSet(SessionControl sc)

Default constructor.

Method Detail

getPeakListSet

public PeakListSet getPeakListSet()

Get the PeakListSet.

Returns:

peakListSet PeakListSet the current peakListSet

setPeakListSet

public void setPeakListSet(PeakListSet peakListSet)

Set the PeakListSet.

Parameters:

peakListSet - PeakListSet the peakListSet to set.