org.proteios.io.mzdata
Class MzDataExpCommonPeakList

java.lang.Object
  org.proteios.io.mzdata.MzDataExpCommon
      org.proteios.io.mzdata.MzDataExpCommonDc
          org.proteios.io.mzdata.MzDataExpCommonAnnotation
              org.proteios.io.mzdata.MzDataExpCommonPeakList

Direct Known Subclasses:

MzDataExpAcqSpecificationBlock, MzDataExpAcquisitionBlock, MzDataExpActivationBlock, MzDataExpDataBlock, MzDataExpIntenArrayBinaryBlock, MzDataExpIonSelectionBlock, MzDataExpMzArrayBinaryBlock, MzDataExpPrecursorBlock, MzDataExpPrecursorListBlock, MzDataExpSpectrumBlock, MzDataExpSpectrumDescBlock, MzDataExpSpectrumInstrumentBlock, MzDataExpSpectrumListBlock, MzDataExpSpectrumSettingsBlock

public class MzDataExpCommonPeakList
extends MzDataExpCommonAnnotation

This class supports export of mzData files from Proteios. An mzData file contains information on a mass spectrometry experiment. Given a Proteios peakListSet, MzDataExporter fetches stored data related to this peakListSet and stores it in an mzData file.

Version:

2.0

Author:

Olle

Last modified

$Date: 2006-09-19 11:38:54 +0200 (Tue, 19 Sep 2006) $

Field Summary

Fields inherited from class org.proteios.io.mzdata.MzDataExpCommonDc

anna, dc, factory

Fields inherited from class org.proteios.io.mzdata.MzDataExpCommon

log

Constructor Summary

MzDataExpCommonPeakList(SessionControl sc)
Default constructor.

Method Summary

PeakList	getPeakList() Get the PeakList.
void	setPeakList(PeakList peakList) Set the PeakList.

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommonAnnotation

createAddedParamAnnotationType, createAnnotationType, createCvLookupAnnotationType, createCvParamAnnotationType, createUserParamAnnotationType, fetchAddedParamAnnotationType, fetchAnnotation, fetchCvLookupAnnotation, fetchCvLookupAnnotationList, fetchCvLookupAnnotationType, fetchCvParamAnnotation, fetchCvParamAnnotationList, fetchUserParamAnnotation, fetchUserParamAnnotationList, obtainAddedParamAnnotationType, obtainCvLookupAnnotationType, storeAnnotation, storeCvLookupAnnotation, storeCvParamAnnotation, storeUserParamAnnotation

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommonDc

enableAnnotator, enableDbControl, enableDbControl, getDbControl, getSessionControl, setDbControl

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommon

getBlockTagName, setBlockTagName, write, writeAttribute, writeEndTag, writeNamespace, writeSimpleElementPair, writeSimpleElementPair, writeSingleElementEnd, writeStartElement, writeStartElementEnd, writeStartListTag, writeStartTag, zeroPad, zeroPad, zeroPad

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MzDataExpCommonPeakList

public MzDataExpCommonPeakList(SessionControl sc)

Default constructor.

Method Detail

getPeakList

public PeakList getPeakList()

Get the PeakList.

Returns:

peakList PeakList the current peakList

setPeakList

public void setPeakList(PeakList peakList)

Set the PeakList.

Parameters:

peakList - PeakList the peakList to set.