org.proteios.io.mzdata
Class MzDataExpCommonDc

java.lang.Object
  org.proteios.io.mzdata.MzDataExpCommon
      org.proteios.io.mzdata.MzDataExpCommonDc

Direct Known Subclasses:

MzDataExpCommonAnnotation

public class MzDataExpCommonDc
extends MzDataExpCommon

This class supports export of mzData files from Proteios. An mzData file contains information on a mass spectrometry experiment. Given a Proteios peakListSet, MzDataExporter fetches stored data related to this peakListSet and stores it in an mzData file.

Version:

2.0

Author:

Olle

Last modified

$Date: 2006-09-19 11:38:54 +0200 (Tue, 19 Sep 2006) $

Field Summary

protected Annotator	anna
protected DbControl	dc
protected ItemFactory	factory

Fields inherited from class org.proteios.io.mzdata.MzDataExpCommon

log

Constructor Summary

MzDataExpCommonDc(SessionControl sc)
Default constructor.

Method Summary

void	enableAnnotator(DbControl dc) Make sure that Annotator exists, and that the DbControl is attached to it.
void	enableDbControl() Make sure that DbControl is running.
void	enableDbControl(BasicItem item) Make sure that DbControl is running, and that the item is attached to it.
DbControl	getDbControl() Get the DbControl.
SessionControl	getSessionControl()
void	setDbControl(DbControl dc) Set the DbControl.

Methods inherited from class org.proteios.io.mzdata.MzDataExpCommon

getBlockTagName, setBlockTagName, write, writeAttribute, writeEndTag, writeNamespace, writeSimpleElementPair, writeSimpleElementPair, writeSingleElementEnd, writeStartElement, writeStartElementEnd, writeStartListTag, writeStartTag, zeroPad, zeroPad, zeroPad

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

dc

protected DbControl dc

factory

protected ItemFactory factory

anna

protected Annotator anna

Constructor Detail

MzDataExpCommonDc

public MzDataExpCommonDc(SessionControl sc)

Default constructor.

Method Detail

getSessionControl

public SessionControl getSessionControl()

getDbControl

public DbControl getDbControl()

Get the DbControl.

Returns:

dc DbControl the current DbControl.

setDbControl

public void setDbControl(DbControl dc)

Set the DbControl.

Parameters:

dc - DbControl the DbControl to set.

enableDbControl

public void enableDbControl()

Make sure that DbControl is running.

enableDbControl

public void enableDbControl(BasicItem item)

Make sure that DbControl is running, and that the item is attached to it.

Parameters:

item - BasicItem item to reattach to DbController

enableAnnotator

public void enableAnnotator(DbControl dc)

Make sure that Annotator exists, and that the DbControl is attached to it.

Parameters:

dc - DbControl to attach to Annotator