org.proteios.io
Class TandemFileReader

java.lang.Object
  org.proteios.io.TandemFileReader

All Implemented Interfaces:

IdentificationFileInterface

public class TandemFileReader
extends Object
implements IdentificationFileInterface

Reads a tandem xml file

Author:

gregory

Constructor Summary

TandemFileReader(InputStream stream)

Method Summary

String	getInputFileName()
List<HitInterface>	listAllHits()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TandemFileReader

public TandemFileReader(InputStream stream)
                 throws javax.xml.stream.XMLStreamException

Throws:

javax.xml.stream.XMLStreamException

Method Detail

getInputFileName

public String getInputFileName()

Specified by:

getInputFileName in interface IdentificationFileInterface

Returns:

name of file used as input for this search result or null. The filename will be without path.

listAllHits

public List<HitInterface> listAllHits()

Specified by:

listAllHits in interface IdentificationFileInterface

Returns:

list of hits or empty list if no hits are found