org.proteios.io
Interface HitInterface

All Known Implementing Classes:

AHit

public interface HitInterface

Author:

gregory

Method Summary

Integer	getCharge()
Float	getCoverage()
Float	getDeltaMassInDaltons()
String	getDescription()
Float	getEValue()
Float	getExperimentalMassInDaltons()
String	getExternalId()
Integer	getMatchedPeaks()
Float	getMwInDaltons()
Float	getPi()
String	getPlateId()
Float	getQuantity()
Float	getRetentionTimeInMinutes()
Float	getRMSError()
Float	getScore()
String	getScoreType()
Date	getSearchDate()
Integer	getSpectrumId()
String	getSpectrumStringId()
Integer	getSpotId()
Double	getTotalIntensity()
Integer	getTotalPeaks()
List<String>	getValueOf(List<String> identifiers) Implementation specific method to get an arbitrary values not defined by the methods in this interface.
String	getValueOf(String identifier) Implementation specific method to get an arbitrary value not defined by the methods in this interface.
String	getWellPosition()
Boolean	isProtein()

Method Detail

getRMSError

Float getRMSError()

getTotalIntensity

Double getTotalIntensity()

getPlateId

String getPlateId()

getWellPosition

String getWellPosition()

getCharge

Integer getCharge()

getCoverage

Float getCoverage()

getDescription

String getDescription()

getDeltaMassInDaltons

Float getDeltaMassInDaltons()

getEValue

Float getEValue()

getExperimentalMassInDaltons

Float getExperimentalMassInDaltons()

getExternalId

String getExternalId()

getMatchedPeaks

Integer getMatchedPeaks()

getMwInDaltons

Float getMwInDaltons()

getPi

Float getPi()

getScore

Float getScore()

getScoreType

String getScoreType()

getSearchDate

Date getSearchDate()

getSpotId

Integer getSpotId()

getTotalPeaks

Integer getTotalPeaks()

getSpectrumId

Integer getSpectrumId()

getSpectrumStringId

String getSpectrumStringId()

getRetentionTimeInMinutes

Float getRetentionTimeInMinutes()

isProtein

Boolean isProtein()

getQuantity

Float getQuantity()

getValueOf

String getValueOf(String identifier)

Implementation specific method to get an arbitrary value not defined by the methods in this interface.

Parameters:

identifier -

Returns:

the value of the identifier, null if nothing is found

getValueOf

List<String> getValueOf(List<String> identifiers)

Implementation specific method to get an arbitrary values not defined by the methods in this interface.

Parameters:

identifiers -

Returns:

list of values of the identifiers, list of null values whenever a value is not available. Returned list should always be of the same size as the identifiers list.