org.proteios.io
Class AHit

java.lang.Object
  org.proteios.io.AHit

All Implemented Interfaces:

Annotatable, HitInterface

public class AHit
extends Object
implements HitInterface, Annotatable

Author:

gregory

Constructor Summary

AHit()

Method Summary

Integer	getCharge()
Float	getCoverage()
Float	getDeltaMassInDaltons()
String	getDescription()
Float	getEValue()
Float	getExperimentalMassInDaltons()
String	getExternalId()
Integer	getMatchedPeaks()
Float	getMwInDaltons()
Float	getPi()
String	getPlateId()
Float	getQuantity()
Float	getRetentionTimeInMinutes()
Float	getRMSError()
Float	getScore()
String	getScoreType()
Date	getSearchDate()
Integer	getSpectrumId()
String	getSpectrumStringId()
Integer	getSpotId()
Double	getTotalIntensity()
Integer	getTotalPeaks()
List<String>	getValueOf(List<String> identifiers) Implementation specific method to get an arbitrary values not defined by the methods in this interface.
String	getValueOf(String identifier) Implementation specific method to get an arbitrary value not defined by the methods in this interface.
String	getWellPosition()
Boolean	isProtein()
void	setCharge(Integer charge)
void	setCoverage(Float coverage)
void	setDeltaMassInDaltons(Float delta)
void	setDescription(String description)
void	setEValue(Float eValue)
void	setExperimentalMassInDaltons(Float experimentalMass)
void	setExternalId(String externalId)
void	setMatchedPeaks(Integer matchedPeaks)
void	setMwInDaltons(Float mw)
void	setPi(Float pi)
void	setPlateId(String plateId)
void	setProtein(Boolean protein)
void	setQuantity(Float quantity)
void	setRetentionTimeInMinutes(Float retentionTime)
void	setRMSError(Float RMSError)
void	setScore(Float score)
void	setScoreType(String scoreType)
void	setSearchDate(Date searchDate)
void	setSpectrumId(Integer spectrumId)
void	setSpectrumStringId(String spectrumStringId)
void	setSpotId(Integer spotId)
void	setTotalIntensity(Double totalIntensity)
void	setTotalPeaks(Integer totalPeaks)
void	setWellPosition(String wellPosition)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AHit

public AHit()

Method Detail

getRMSError

public Float getRMSError()

Specified by:

getRMSError in interface HitInterface

getTotalIntensity

public Double getTotalIntensity()

Specified by:

getTotalIntensity in interface HitInterface

setRMSError

public void setRMSError(Float RMSError)

setTotalIntensity

public void setTotalIntensity(Double totalIntensity)

getPlateId

public String getPlateId()

Specified by:

getPlateId in interface HitInterface

getWellPosition

public String getWellPosition()

Specified by:

getWellPosition in interface HitInterface

setPlateId

public void setPlateId(String plateId)

setWellPosition

public void setWellPosition(String wellPosition)

getCharge

public Integer getCharge()

Specified by:

getCharge in interface HitInterface

getCoverage

public Float getCoverage()

Specified by:

getCoverage in interface HitInterface

getDeltaMassInDaltons

public Float getDeltaMassInDaltons()

Specified by:

getDeltaMassInDaltons in interface HitInterface

getDescription

public String getDescription()

Specified by:

getDescription in interface HitInterface

getEValue

public Float getEValue()

Specified by:

getEValue in interface HitInterface

getExperimentalMassInDaltons

public Float getExperimentalMassInDaltons()

Specified by:

getExperimentalMassInDaltons in interface HitInterface

getExternalId

public String getExternalId()

Specified by:

getExternalId in interface HitInterface

getMatchedPeaks

public Integer getMatchedPeaks()

Specified by:

getMatchedPeaks in interface HitInterface

getMwInDaltons

public Float getMwInDaltons()

Specified by:

getMwInDaltons in interface HitInterface

getPi

public Float getPi()

Specified by:

getPi in interface HitInterface

getRetentionTimeInMinutes

public Float getRetentionTimeInMinutes()

Specified by:

getRetentionTimeInMinutes in interface HitInterface

getScore

public Float getScore()

Specified by:

getScore in interface HitInterface

getScoreType

public String getScoreType()

Specified by:

getScoreType in interface HitInterface

getSearchDate

public Date getSearchDate()

Specified by:

getSearchDate in interface HitInterface

getSpotId

public Integer getSpotId()

Specified by:

getSpotId in interface HitInterface

getTotalPeaks

public Integer getTotalPeaks()

Specified by:

getTotalPeaks in interface HitInterface

getSpectrumId

public Integer getSpectrumId()

Specified by:

getSpectrumId in interface HitInterface

getSpectrumStringId

public String getSpectrumStringId()

Specified by:

getSpectrumStringId in interface HitInterface

isProtein

public Boolean isProtein()

Specified by:

isProtein in interface HitInterface

setCharge

public void setCharge(Integer charge)

setCoverage

public void setCoverage(Float coverage)

setDeltaMassInDaltons

public void setDeltaMassInDaltons(Float delta)

setDescription

public void setDescription(String description)

setEValue

public void setEValue(Float eValue)

setExperimentalMassInDaltons

public void setExperimentalMassInDaltons(Float experimentalMass)

setExternalId

public void setExternalId(String externalId)

setMatchedPeaks

public void setMatchedPeaks(Integer matchedPeaks)

setMwInDaltons

public void setMwInDaltons(Float mw)

setPi

public void setPi(Float pi)

setProtein

public void setProtein(Boolean protein)

setRetentionTimeInMinutes

public void setRetentionTimeInMinutes(Float retentionTime)

setScore

public void setScore(Float score)

setScoreType

public void setScoreType(String scoreType)

setSearchDate

public void setSearchDate(Date searchDate)

setSpotId

public void setSpotId(Integer spotId)

setTotalPeaks

public void setTotalPeaks(Integer totalPeaks)

setSpectrumId

public void setSpectrumId(Integer spectrumId)

setSpectrumStringId

public void setSpectrumStringId(String spectrumStringId)

setQuantity

public void setQuantity(Float quantity)

getValueOf

public String getValueOf(String identifier)

Description copied from interface: HitInterface

Implementation specific method to get an arbitrary value not defined by the methods in this interface.

Specified by:

getValueOf in interface HitInterface

Returns:

the value of the identifier, null if nothing is found

getValueOf

public List<String> getValueOf(List<String> identifiers)

Description copied from interface: HitInterface

Implementation specific method to get an arbitrary values not defined by the methods in this interface.

Specified by:

getValueOf in interface HitInterface

Returns:

list of values of the identifiers, list of null values whenever a value is not available. Returned list should always be of the same size as the identifiers list.

getQuantity

public Float getQuantity()

Specified by:

getQuantity in interface HitInterface