org.proteios.core

Interfaces  AbortableJobQueueInterface AbortableJobQueueReadOnlyInterface AbortablePluginInterface AbsoluteProgressReporter AccessControlled Annotatable Batcher Controlled DiskConsumable FileAttachable Identifiable ManageableJobQueueInterface ManageableJobQueueReadOnlyInterface Nameable Ownable ProgressReporter Removable Shareable SystemItem Transactional UpdateToSchemaVersionInterface Validatable

Classes  AbstractBatcher AbstractUpdateToSchemaVersion Acquisition AliasKeyManager AnnotatedItem Annotation AnnotationBetweenRestriction AnnotationInRestriction AnnotationSet AnnotationSimpleRestriction AnnotationType Annotator Application Base64Coder BasicBatcher BasicItem BatchedPropertyInfo BioMaterial BioMaterialEvent BioSource BooleanParameterType ClassMetadataExposed Client CommonItem Config CreationEvent DataProcessingStep DataQuery DataResultIterator DateParameterType DateUtil DbControl DefaultAttributeFilter DigestParameter Directory DiskUsage DoubleParameterType DynamicResultIterator ExtendedProperties ExtendedProperty ExtendedPropertyAccessor Extract Feature File FileAttributeFilter FileNode FileParameterType FileType FloatParameterType GelElectrophoresis GelImageAnalysisEvent GelScanEvent GlobalDefaultSetting Group GroupPermissions Hardware HardwareConfiguration HardwareType HibernateUtil Hit HitsFilterForGelBasedProjects HitsFilterForNonGelBasedProjects Install InstrumentConfiguration IntegerParameterType IntegerUtil IPG ItemFactory ItemKey ItemParameterType ItemQuery ItemResultIterator ItemResultList Job JobQueueManager JobQueueScheduler Key Label LabeledExtract LiquidChromatography LongParameterType LsidElement LsidElement.SequenceRetriever MascotParameterSetStorage MeasuredArea MeasuredBioMaterial Message Metadata MimeType MinimalAttributeFilter MinimalAttributeFilter2 Modification MultiPermissions NameableUtil News ObservedModification OMSSAParameterSetStorage OwnableUtil OwnedItem ParameterType Path Peak PeakBatcher PeakList PeakListBatcher PeakListSet Peptide PluginConfiguration PluginConfigurationRequest PluginDefinition PluginExecutionRequest PluginParameter PluginResponse PluginType PolyPeptide Precursor PreferencesFile Project ProjectKey ProjectPermissions PropertiesFileHandler PropertyFilter Protein Protocol ProtocolType QueryFactory Quota QuotaType RealTable RequestInformation Role RoleKey Sample SchemaVersion SearchDatabase SearchModification SearchResult SeparationEvent SeparationMethod Session SessionControl Setting ShareableUtil SharedItem SimpleAbsoluteProgressReporter SimpleProgressReporter Software SoftwareConfiguration SoftwareType SpectrumSearch StainingEvent StringParameterType StringUtil SystemItems Update UpdateEvent UpdatesFactory UpdateToSchemaVersion10 UpdateToSchemaVersion2 UpdateToSchemaVersion3 UpdateToSchemaVersion4 UpdateToSchemaVersion5 UpdateToSchemaVersion6 UpdateToSchemaVersion7 UpdateToSchemaVersion8 UpdateToSchemaVersion9 UpdateToSchemaVersionTmpl User UserPermissions XTandemParameterSetStorage

Enums  File.Action Include Item Job.ExecutionTime Job.Status Job.Type Location Operator Path.Type Permission SearchModification.TerminalSpecificity SortOrder Transactional.Action Type

Exceptions  AccountExpiredException AlreadyLoggedInException BaseException ConfigurationException ConnectionClosedException DatabaseException DetachedItemException InvalidAnnotationException InvalidDataException InvalidPasswordException InvalidPathException InvalidUseOfNullException ItemAlreadyExistsException ItemInUseException ItemModifiedException ItemNotFoundException NotLoggedInException NumberOutOfRangeException ParameterException PermissionDeniedException QuotaException StringTooLongException