org.proteios.core.data
Class PrecursorData

java.lang.Object
  org.proteios.core.data.BasicData
      org.proteios.core.data.PrecursorData

All Implemented Interfaces:

IdentifiableData

public class PrecursorData
extends BasicData

This represents a precursor. A precursor item has information about the precursor in a 2-D mass spectrometry experiment.

Version:

2.0

Author:

Olle

See Also:

Precursor, Precursors overview

Last modified

$Date: 2006-06-02 14:31:54Z $

Hibernate: class

table="`Precursors`" lazy="true"

Constructor Summary

PrecursorData()

Method Summary

InstrumentConfigurationData	getActivation() Get the activation
int	getChargeState() Get the chargeState value
Float	getIntensity() Get the precursor intensity.
InstrumentConfigurationData	getIonSelection() Get the ionSelection
Float	getMassToChargeRatio() Get the massToChargeRatio.
int	getMsLevel() Get the msLevel value
PeakListData	getPeakList() Get the PeakListData this precursor is created from.
int	getSpectrumRef() Get the spectrumRef value
void	setActivation(InstrumentConfigurationData activation) Set the activation
void	setChargeState(int chargeState) Set the chargeState
void	setIntensity(Float intensity) Set the precursor intensity
void	setIonSelection(InstrumentConfigurationData ionSelection) Set the ionSelection
void	setMassToChargeRatio(Float massToChargeRatio) Set the massToChargeRatio
void	setMsLevel(int msLevel) Set the msLevel
void	setPeakList(PeakListData peakList) Set the PeakListData this precursor is created from. param
void	setSpectrumRef(int spectrumRef) Set the spectrumRef

Methods inherited from class org.proteios.core.data.BasicData

equals, getId, getVersion, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

PrecursorData

public PrecursorData()

Method Detail

getActivation

public InstrumentConfigurationData getActivation()

Get the activation

Returns:

The InstrumentConfigurationData activation

Hibernate: many-to-one

column="`activation_id`" cascade="all" not-null="false" outer-join="false"

setActivation

public void setActivation(InstrumentConfigurationData activation)

Set the activation

Parameters:

activation - The InstrumentConfigurationData activation

getChargeState

public int getChargeState()

Get the chargeState value

Returns:

the chargeState value

Hibernate: property

column="`chargeState`" type="int" not-null="true"

setChargeState

public void setChargeState(int chargeState)

Set the chargeState

Parameters:

chargeState - The chargeState value

getIonSelection

public InstrumentConfigurationData getIonSelection()

Get the ionSelection

Returns:

The InstrumentConfigurationData ionSelection

Hibernate: many-to-one

column="`ionSelection_id`" cascade="all" not-null="false" outer-join="false"

setIonSelection

public void setIonSelection(InstrumentConfigurationData ionSelection)

Set the ionSelection

Parameters:

ionSelection - The InstrumentConfigurationData ionSelection

getMassToChargeRatio

public Float getMassToChargeRatio()

Get the massToChargeRatio.

Returns:

the massToChargeRatio value

Hibernate: property

column="`mass_to_charge_ratio`" type="float" not-null="false"

setMassToChargeRatio

public void setMassToChargeRatio(Float massToChargeRatio)

Set the massToChargeRatio

Parameters:

massToChargeRatio - The Float massToChargeRatio value

getIntensity

public Float getIntensity()

Get the precursor intensity.

Returns:

the intensity value

Hibernate: property

column="`intensity`" type="float" not-null="false"

setIntensity

public void setIntensity(Float intensity)

Set the precursor intensity

Parameters:

intensity - The Float intensity value

getMsLevel

public int getMsLevel()

Get the msLevel value

Returns:

the msLevel value

Hibernate: property

column="`mslevel`" type="int" not-null="true"

setMsLevel

public void setMsLevel(int msLevel)

Set the msLevel

Parameters:

msLevel - The msLevel value

getSpectrumRef

public int getSpectrumRef()

Get the spectrumRef value

Returns:

the spectrumRef value

Hibernate: property

column="`spectrum_ref`" type="int" not-null="false"

setSpectrumRef

public void setSpectrumRef(int spectrumRef)

Set the spectrumRef

Parameters:

spectrumRef - The int spectrumRef value

getPeakList

public PeakListData getPeakList()

Get the PeakListData this precursor is created from.

Returns:

The PeakListData item or null if not known

Hibernate: many-to-one

column="`peakListId`" not-null="false" outer-join="false"

setPeakList

public void setPeakList(PeakListData peakList)

Set the PeakListData this precursor is created from. param

Parameters:

peakList - The PeakListData creator peakList