org.proteios.core
Class GelScanEvent

java.lang.Object
  org.proteios.core.BasicItem<D>
      org.proteios.core.BioMaterialEvent<GelScanEventData>
          org.proteios.core.GelScanEvent

All Implemented Interfaces:

AccessControlled, Identifiable

public class GelScanEvent
extends BioMaterialEvent<GelScanEventData>

This class represent GelScanEvent items. A GelScanEvent has information about a gel scanning. One event will results in one sourceFile = raw picture file. BioMaterial is used to link to the extract that was used for the gel. For a DiGE gel there will be one scan event per color.

Version:

2.0

Author:

Olle

Last modified

$Date: 2006-09-12 12:33:12Z $

Field Summary

static Item

TYPE The type of item represented by this class.

Fields inherited from class org.proteios.core.BioMaterialEvent

MAX_COMMENT_LENGTH

Method Summary

Set<Annotatable>	getAnnotatableParents() Always null.
GelElectrophoresis	getGelElectrophoresis() Get the GelElectrophoresis this GelScanEvent is associated with.
HardwareConfiguration	getHardwareSettings()
File	getImageFile() The raw image file
static ItemQuery<GelScanEvent>	getQuery() Get a query that returns GelScanEvent items.
Item	getType() Get the type of item represented by the object.
boolean	isUsed() Check that: no item has been created from this GelScanEvent
void	setGelElectrophoresis(GelElectrophoresis gelElectrophoresis) Set the GelElectrophoresis this GelScanEvent is associated with.
void	setHardwareSettings(HardwareConfiguration hardwareSettings)
void	setImageFile(File imageFile) The raw image file.

Methods inherited from class org.proteios.core.BioMaterialEvent

addSource, getBioMaterial, getComment, getEntryDate, getEventDate, getEventType, getPreviousBioMaterialEvent, getProtocol, getQuery, getSourceBioMaterials, getSources, getUsedQuantityInMicroLiters, getUsedQuantityInMicroLiters, getUser, removeSource, setBioMaterial, setComment, setEntryDate, setEventDate, setPreviousBioMaterialEvent, setProtocol, setUsedQuantityInMicroLiters, setUser

Methods inherited from class org.proteios.core.BasicItem

checkPermission, equals, getDbControl, getId, getPermissions, getSessionControl, getVersion, hashCode, hasPermission, isDetached, isInDatabase, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

TYPE

public static final Item TYPE

The type of item represented by this class.

See Also:

Item.PROTEIOS_GELSCANEVENT, getType()

Method Detail

getQuery

public static ItemQuery<GelScanEvent> getQuery()

Get a query that returns GelScanEvent items.

Returns:

An ItemQuery object.

getType

public Item getType()

Description copied from interface: Identifiable

Get the type of item represented by the object. The returned value is one of the values defined in the Item enumeration.

Specified by:

getType in interface Identifiable

Overrides:

getType in class BioMaterialEvent<GelScanEventData>

Returns:

A value indicating the type of item

getAnnotatableParents

public Set<Annotatable> getAnnotatableParents()
                                       throws BaseException

Always null.

Throws:

BaseException

isUsed

public boolean isUsed()
               throws BaseException

Check that:

• no item has been created from this GelScanEvent

Overrides:

isUsed in class BioMaterialEvent<GelScanEventData>

Returns:

Always false

Throws:

BaseException

getGelElectrophoresis

public GelElectrophoresis getGelElectrophoresis()
                                         throws BaseException

Get the GelElectrophoresis this GelScanEvent is associated with.

Returns:

The GelElectrophoresis item or null if not known

Throws:

BaseException - If there is another error

setGelElectrophoresis

public void setGelElectrophoresis(GelElectrophoresis gelElectrophoresis)
                           throws BaseException

Set the GelElectrophoresis this GelScanEvent is associated with.

Parameters:

gelElectrophoresis - The new GelElectrophoresis item

Throws:

BaseException - If there is another error

getImageFile

public File getImageFile()
                  throws BaseException

The raw image file

Throws:

BaseException

setImageFile

public void setImageFile(File imageFile)
                  throws InvalidDataException

The raw image file.

Throws:

InvalidDataException

getHardwareSettings

public HardwareConfiguration getHardwareSettings()
                                          throws BaseException

Throws:

BaseException

setHardwareSettings

public void setHardwareSettings(HardwareConfiguration hardwareSettings)
                         throws InvalidDataException

Throws:

InvalidDataException