org.proteios.core.data
Class SearchResultData

java.lang.Object
  org.proteios.core.data.BasicData
      org.proteios.core.data.OwnedData
          org.proteios.core.data.SharedData
              org.proteios.core.data.CommonData
                  org.proteios.core.data.AnnotatedData
                      org.proteios.core.data.SearchResultData

All Implemented Interfaces:

Comparable<SearchResultData>, AnnotatableData, IdentifiableData, NameableData, OwnableData, RemovableData, ShareableData

public class SearchResultData
extends AnnotatedData
implements Comparable<SearchResultData>

This class represents a search result. The index has to be unique within the SearchResultSet in SpectrumSearchData, and is used for sorting.

Version:

2.0

Author:

Fredrik

See Also:

SearchResult, SearchResult overview

Last modified

$Date: 2009-04-09 08:48:11 +0200 (Thu, 09 Apr 2009) $

Hibernate: class

table="`SearchResults`" lazy="true"

Hibernate: subclass

discriminator-value="1"

Field Summary

static int	MAX_SCORETYPE_LENGTH
static int	MAX_SPECTRUMSTRINGID_LENGTH

Fields inherited from interface org.proteios.core.data.NameableData

MAX_DESCRIPTION_LENGTH, MAX_NAME_LENGTH

Constructor Summary

SearchResultData()

Method Summary

int	compareTo(SearchResultData o)
Float	getExpectationValue()
int	getIndex()
int	getInputSpectrumId()
PeakListData	getPeakList()
Set<PolyPeptideData>	getPolyPeptides()
List<SearchResultData>	getReferencedResults()
Float	getScore()
String	getScoreType()
SpectrumSearchData	getSpectrumSearch()
String	getSpectrumStringId()
void	setExpectationValue(Float value)
void	setIndex(int index)
void	setInputSpectrumId(int inputSpectrumId)
void	setPeakList(PeakListData peakList)
void	setPolyPeptides(Set<PolyPeptideData> polyPeptides)
void	setReferencedResults(List<SearchResultData> referencedResults)
void	setScore(Float score)
void	setScoreType(String scoreType)
void	setSpectrumSearch(SpectrumSearchData spectrumSearch)
void	setSpectrumStringId(String spectrumStringId)

Methods inherited from class org.proteios.core.data.AnnotatedData

getAnnotationSet, setAnnotationSet

Methods inherited from class org.proteios.core.data.CommonData

getDescription, getName, isRemoved, setDescription, setName, setRemoved

Methods inherited from class org.proteios.core.data.SharedData

getItemKey, getProjectKey, setItemKey, setProjectKey

Methods inherited from class org.proteios.core.data.OwnedData

getOwner, setOwner

Methods inherited from class org.proteios.core.data.BasicData

equals, getId, getVersion, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.proteios.core.data.IdentifiableData

getId, getVersion

Methods inherited from interface org.proteios.core.data.OwnableData

getOwner, setOwner

Field Detail

MAX_SCORETYPE_LENGTH

public static final int MAX_SCORETYPE_LENGTH

See Also:

Constant Field Values

MAX_SPECTRUMSTRINGID_LENGTH

public static final int MAX_SPECTRUMSTRINGID_LENGTH

See Also:

Constant Field Values

Constructor Detail

SearchResultData

public SearchResultData()

Method Detail

compareTo

public int compareTo(SearchResultData o)

Specified by:

compareTo in interface Comparable<SearchResultData>

getIndex

public int getIndex()

Returns:

Returns the index.

Hibernate: property

column="`index`"

setIndex

public void setIndex(int index)

Parameters:

index - The index to set.

getInputSpectrumId

public int getInputSpectrumId()

Returns:

Returns the inputSpectrumId.

Hibernate: property

column="`inputSpectrumId`" not-null="false"

setInputSpectrumId

public void setInputSpectrumId(int inputSpectrumId)

Parameters:

inputSpectrumId - The inputSpectrumId to set.

getExpectationValue

public Float getExpectationValue()

Returns:

Returns the eValue.

Hibernate: property

column="`e_value`" type="float" not-null="false"

setExpectationValue

public void setExpectationValue(Float value)

Parameters:

value - The eValue to set.

getScore

public Float getScore()

Returns:

Returns the score.

Hibernate: property

column="`score`" type="float" not-null="false"

setScore

public void setScore(Float score)

Parameters:

score - The score to set.

getScoreType

public String getScoreType()

Returns:

Returns the scoreType.

Hibernate: property

column="`score_type`" type="string" length="255" not-null="false"

setScoreType

public void setScoreType(String scoreType)

Parameters:

scoreType - The scoreType to set.

getPeakList

public PeakListData getPeakList()

Returns:

Returns the peakList.

Hibernate: many-to-one

column="`peaklist_id`"

setPeakList

public void setPeakList(PeakListData peakList)

Parameters:

peakList - The peakList to set.

getSpectrumSearch

public SpectrumSearchData getSpectrumSearch()

Returns:

Returns the spectrumSearch.

Hibernate: many-to-one

column="`spectrumSearchId`"

setSpectrumSearch

public void setSpectrumSearch(SpectrumSearchData spectrumSearch)

Parameters:

spectrumSearch - The spectrumSearch to set.

getReferencedResults

public List<SearchResultData> getReferencedResults()

Returns:

Returns the referencedResults. Empty ArrayList if no referenced results

Hibernate: list

table="`ReferencedResults`" lazy="true"

Hibernate: collection-key

column="`id`"

Hibernate: collection-index

column="`index`"

Hibernate: collection-many-to-many

class="org.proteios.core.data.SearchResultData" column="`resref_id`" not-null="false"

setReferencedResults

public void setReferencedResults(List<SearchResultData> referencedResults)

Parameters:

referencedResults - The referencedResults to set.

getPolyPeptides

public Set<PolyPeptideData> getPolyPeptides()

Returns:

Returns the polyPeptides.

Hibernate: set

table="`PolyPeptides`" cascade="delete" lazy="true" inverse="true"

Hibernate: collection-key

column="`searchResultId`"

Hibernate: collection-one-to-many

class="org.proteios.core.data.PolyPeptideData" column="`resref_id`" not-null="false"

setPolyPeptides

public void setPolyPeptides(Set<PolyPeptideData> polyPeptides)

Parameters:

polyPeptides - The polyPeptides to set.

getSpectrumStringId

public String getSpectrumStringId()

Returns:

Returns the spectrumStringId.

Hibernate: property

column="`spectrumStringId`" length="255" type="string" not-null="false"

setSpectrumStringId

public void setSpectrumStringId(String spectrumStringId)

Parameters:

spectrumStringId - The spectrumStringId to set.